Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18280

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,941,527	+		DZA65_RS18275	0.57	-1.6
3,941,594	-		DZA65_RS18275	0.61	+0.6
3,941,613	+		DZA65_RS18275	0.63	+2.3
3,941,634	+		DZA65_RS18275	0.64	-1.0
3,941,635	-		DZA65_RS18275	0.64	+1.0
3,941,635	-		DZA65_RS18275	0.64	+0.8
3,941,635	-		DZA65_RS18275	0.64	-1.3
3,941,636	+		DZA65_RS18275	0.64	-1.6
3,941,636	+		DZA65_RS18275	0.64	+0.7
3,941,759	+		DZA65_RS18275	0.72	+0.2
3,941,759	+		DZA65_RS18275	0.72	+1.0
3,941,759	+		DZA65_RS18275	0.72	+0.0
3,941,759	+		DZA65_RS18275	0.72	-0.2
3,941,760	-		DZA65_RS18275	0.72	+0.4
3,941,762	+		DZA65_RS18275	0.72	+0.2
3,941,762	+		DZA65_RS18275	0.72	-1.3
3,941,762	+		DZA65_RS18275	0.72	-0.3
3,941,762	+		DZA65_RS18275	0.72	-0.4
3,941,763	-		DZA65_RS18275	0.72	+0.0
3,941,763	-		DZA65_RS18275	0.72	+0.0
3,941,763	-		DZA65_RS18275	0.72	-1.3
3,941,763	-		DZA65_RS18275	0.72	-0.3
3,941,763	-		DZA65_RS18275	0.72	-1.7
3,941,763	-		DZA65_RS18275	0.72	+0.6
3,941,785	+		DZA65_RS18275	0.74	+0.0
3,941,823	-		DZA65_RS18275	0.76	-1.0
3,941,831	+		DZA65_RS18275	0.76	-0.2
3,941,844	+		DZA65_RS18275	0.77	+1.0
3,941,844	+		DZA65_RS18275	0.77	-0.7
3,941,845	-		DZA65_RS18275	0.77	+0.0
3,941,845	-		DZA65_RS18275	0.77	-0.6
3,941,845	-		DZA65_RS18275	0.77	+0.0
3,941,845	-		DZA65_RS18275	0.77	-1.3
3,941,871	+		DZA65_RS18275	0.79	-0.2
3,941,871	+		DZA65_RS18275	0.79	-1.0
3,941,871	+		DZA65_RS18275	0.79	+0.3
3,941,872	-		DZA65_RS18275	0.79	-0.2
3,941,872	-		DZA65_RS18275	0.79	-0.1
3,941,872	-		DZA65_RS18275	0.79	+0.7
3,941,876	-		DZA65_RS18275	0.79	-0.9
3,941,885	+		DZA65_RS18275	0.80	+0.1
3,941,917	+		DZA65_RS18275	0.82	-0.9
3,941,927	+		DZA65_RS18275	0.82	+0.4
3,941,927	+		DZA65_RS18275	0.82	-0.1
3,941,927	+		DZA65_RS18275	0.82	+0.7
3,941,927	+		DZA65_RS18275	0.82	-0.8
3,941,928	-		DZA65_RS18275	0.83	+0.3
3,941,928	-		DZA65_RS18275	0.83	+0.7
3,941,928	-		DZA65_RS18275	0.83	-1.6
3,941,928	-		DZA65_RS18275	0.83	-1.6
3,941,981	+		DZA65_RS18275	0.86	+0.0
3,941,981	+		DZA65_RS18275	0.86	-2.4
3,941,982	-		DZA65_RS18275	0.86	-0.7
3,941,982	-		DZA65_RS18275	0.86	-0.8
3,941,982	-		DZA65_RS18275	0.86	+0.2
3,942,024	+		DZA65_RS18275	0.89	+0.2
3,942,024	+		DZA65_RS18275	0.89	+0.0
3,942,024	+		DZA65_RS18275	0.89	-0.9
3,942,030	+		DZA65_RS18275	0.89	-0.4
3,942,030	+		DZA65_RS18275	0.89	-1.3
3,942,031	-		DZA65_RS18275	0.89	+1.6
3,942,031	-		DZA65_RS18275	0.89	-0.2
3,942,032	+		DZA65_RS18275	0.89	+1.0
3,942,032	+		DZA65_RS18275	0.89	+0.3
3,942,032	+		DZA65_RS18275	0.89	+0.1
3,942,032	+		DZA65_RS18275	0.89	-0.9
3,942,033	-		DZA65_RS18275	0.89	-1.7
3,942,033	-		DZA65_RS18275	0.89	-1.3
3,942,033	-		DZA65_RS18275	0.89	-1.3
3,942,033	-		DZA65_RS18275	0.89	+0.0
3,942,033	-		DZA65_RS18275	0.89	+0.0
3,942,033	-		DZA65_RS18275	0.89	+1.3
3,942,033	-		DZA65_RS18275	0.89	+0.2
3,942,077	-				+1.0
3,942,156	+				-0.3
3,942,189	+				+0.4
3,942,189	+				-2.0
3,942,189	+				-0.3
3,942,189	+				-1.0
3,942,248	-				+1.0
3,942,248	-				-2.6
3,942,251	+				+0.3
3,942,251	+				-1.8
3,942,251	+				-1.1
3,942,251	+				+0.8
3,942,251	+				-0.8
3,942,251	+				-0.8
3,942,251	+				-0.4
3,942,252	-				-0.2
3,942,252	-				+1.0
3,942,252	-				+0.5
3,942,252	-				+0.7
3,942,252	-				-1.0
3,942,252	-				-2.7
3,942,252	-				-0.8
3,942,356	-				-0.3
3,942,356	-				+0.0
3,942,364	+				-0.6
3,942,365	-				+0.0
3,942,368	+				+0.6
3,942,392	+				-0.6
3,942,393	-				+0.0
3,942,422	-				+0.7
3,942,422	-				-0.2
3,942,422	-				+0.0
3,942,472	+				+1.0
3,943,047	+				-0.6
3,943,047	+				-1.2
3,943,048	-				+1.0
3,943,048	-				+1.0
3,943,048	-				-1.2
3,943,048	-				+2.0
3,943,048	-				+0.1
3,943,048	-				-0.1
3,943,054	-				+0.0
3,943,054	-				-1.8
3,943,194	+		DZA65_RS18285	0.20	-0.3
3,943,195	-		DZA65_RS18285	0.20	-0.7
3,943,200	+		DZA65_RS18285	0.22	-1.0
3,943,200	+		DZA65_RS18285	0.22	+0.0
3,943,200	+		DZA65_RS18285	0.22	+0.5
3,943,200	+		DZA65_RS18285	0.22	+1.0
3,943,231	+		DZA65_RS18285	0.31	-1.7
3,943,288	+		DZA65_RS18285	0.47	-0.9
3,943,289	-		DZA65_RS18285	0.47	+0.7
3,943,305	+		DZA65_RS18285	0.52	+1.6
3,943,306	-		DZA65_RS18285	0.52	-0.6
3,943,317	+		DZA65_RS18285	0.55	-1.4
3,943,365	+		DZA65_RS18285	0.69	-0.2
3,943,365	+		DZA65_RS18285	0.69	-1.0
3,943,366	-		DZA65_RS18285	0.70	-0.3
3,943,366	-		DZA65_RS18285	0.70	+0.0
3,943,367	+		DZA65_RS18285	0.70	-0.9
3,943,367	+		DZA65_RS18285	0.70	-2.0
3,943,367	+		DZA65_RS18285	0.70	-1.9
3,943,367	+		DZA65_RS18285	0.70	-0.2
3,943,368	-		DZA65_RS18285	0.70	+1.0
3,943,368	-		DZA65_RS18285	0.70	-0.8
3,943,375	-		DZA65_RS18285	0.72	+0.0
3,943,462	+				-1.7
3,943,463	-				+0.1
3,943,463	-				-1.0
3,943,476	-				-0.5
3,943,490	+				-0.8
3,943,490	+				-0.7
3,943,491	-				-1.6
3,943,491	-				-0.2
3,943,491	-				-0.3
3,943,491	-				+0.0
3,943,491	-				-2.2
3,943,536	-				-1.3
3,943,536	-				-1.0
3,943,536	-				-1.0
3,943,536	-				-1.3
3,943,537	+				-1.6
3,943,537	+				-1.0
3,943,557	-				-1.8
3,943,561	+				-0.6
3,943,561	+				+1.3
3,943,561	+				+1.0
3,943,561	+				-0.3
3,943,562	-				-3.2
3,943,601	+				-1.8
3,943,601	+				-2.2
3,943,601	+				-0.3
3,943,601	+				+0.4
3,943,601	+				-1.0
3,943,601	+				-0.3
3,943,602	-				-0.6
3,943,602	-				-0.8
3,943,602	-				-1.8
3,943,602	-				+0.5
3,943,602	-				-1.6
3,943,602	-				+1.0
3,943,602	-				+0.3
3,943,602	-				-0.2
3,943,629	-				+0.0
3,943,672	-				+0.2
3,943,681	+				+1.0
3,943,681	+				-1.3
3,943,681	+				+0.0
3,943,681	+				-1.1
3,943,681	+				-0.6
3,943,682	-				-1.4
3,943,690	+				-0.0
3,943,691	-				+1.0
3,943,777	-				-0.2
3,943,777	-				+0.0
3,943,817	+				-0.2
3,943,817	+				-1.3
3,943,817	+				+0.5
3,943,818	-				+0.4
3,943,818	-				-0.6
3,944,008	+		DZA65_RS18290	0.14	+0.2
3,944,008	+		DZA65_RS18290	0.14	-2.0
3,944,008	+		DZA65_RS18290	0.14	+0.4
3,944,009	-		DZA65_RS18290	0.14	-0.5
3,944,009	-		DZA65_RS18290	0.14	-1.8
3,944,009	-		DZA65_RS18290	0.14	-1.4
3,944,009	-		DZA65_RS18290	0.14	-1.0
3,944,009	-		DZA65_RS18290	0.14	+2.6
3,944,009	-		DZA65_RS18290	0.14	+1.6
3,944,009	-		DZA65_RS18290	0.14	+2.0
3,944,021	+		DZA65_RS18290	0.14	-1.3
3,944,022	-		DZA65_RS18290	0.15	-1.2
3,944,022	-		DZA65_RS18290	0.15	-0.2
3,944,022	-		DZA65_RS18290	0.15	+0.3
3,944,022	-		DZA65_RS18290	0.15	-1.9