Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14935

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS14930 and DZA65_RS14935 are separated by 96 nucleotidesDZA65_RS14935 and DZA65_RS14940 overlap by 4 nucleotidesDZA65_RS14940 and DZA65_RS14945 overlap by 4 nucleotidesDZA65_RS14945 and DZA65_RS14950 are separated by 10 nucleotides DZA65_RS14930: DZA65_RS14930 - NADH-quinone oxidoreductase subunit M, at 3,257,004 to 3,258,539 _RS14930 DZA65_RS14935: DZA65_RS14935 - NADH-quinone oxidoreductase subunit L, at 3,258,636 to 3,260,486 _RS14935 DZA65_RS14940: DZA65_RS14940 - NADH-quinone oxidoreductase subunit NuoK, at 3,260,483 to 3,260,785 _RS14940 DZA65_RS14945: DZA65_RS14945 - NADH-quinone oxidoreductase subunit J, at 3,260,782 to 3,261,333 _RS14945 DZA65_RS14950: DZA65_RS14950 - NADH-quinone oxidoreductase subunit NuoI, at 3,261,344 to 3,261,886 _RS14950 Position (kb) 3258 3259 3260 3261Strain fitness (log2 ratio) -1 0 1at 3259.199 kb on - strand, within DZA65_RS14935at 3260.507 kb on - strandat 3261.318 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,259,199 - DZA65_RS14935 0.30 -0.4
3,260,507 - -0.7
3,261,318 - -1.4

Or see this region's nucleotide sequence