Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14800

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,224,312	-		DZA65_RS14795	0.29	+0.2
3,224,340	+		DZA65_RS14795	0.32	-1.3
3,224,340	+		DZA65_RS14795	0.32	-0.4
3,224,340	+		DZA65_RS14795	0.32	+0.1
3,224,340	+		DZA65_RS14795	0.32	-0.0
3,224,341	-		DZA65_RS14795	0.32	+0.4
3,224,341	-		DZA65_RS14795	0.32	+0.1
3,224,606	+		DZA65_RS14795	0.54	-2.1
3,224,606	+		DZA65_RS14795	0.54	-0.7
3,224,607	-		DZA65_RS14795	0.54	+0.3
3,224,607	-		DZA65_RS14795	0.54	-0.1
3,224,607	-		DZA65_RS14795	0.54	-1.9
3,224,607	-		DZA65_RS14795	0.54	-3.3
3,224,607	-		DZA65_RS14795	0.54	-0.1
3,224,656	-		DZA65_RS14795	0.58	+0.3
3,224,656	-		DZA65_RS14795	0.58	-0.5
3,224,692	-		DZA65_RS14795	0.61	-0.9
3,224,699	+		DZA65_RS14795	0.62	-2.5
3,224,699	+		DZA65_RS14795	0.62	+0.2
3,224,819	+		DZA65_RS14795	0.71	-0.5
3,225,016	+		DZA65_RS14795	0.88	-1.1
3,225,017	-		DZA65_RS14795	0.88	+0.0
3,225,017	-		DZA65_RS14795	0.88	-0.9
3,225,099	+				+0.9
3,225,099	+				-0.9
3,225,099	+				+0.1
3,225,099	+				-0.3
3,225,099	+				-0.6
3,225,100	-				-0.6
3,225,100	-				-1.6
3,225,100	-				+0.0
3,225,100	-				-1.4
3,225,100	-				+1.2
3,225,120	+				-1.6
3,225,130	+				-1.9
3,225,131	-				-0.9
3,225,131	-				-0.7
3,225,282	+				-1.8
3,225,282	+				-2.4
3,225,283	-				+0.4
3,225,283	-				-1.0
3,225,283	-				-0.6
3,225,283	-				-0.6
3,225,283	-				+0.4
3,225,283	-				-1.1
3,225,283	-				+0.4
3,225,383	-		DZA65_RS14800	0.10	-0.6
3,225,400	+		DZA65_RS14800	0.12	+0.0
3,225,400	+		DZA65_RS14800	0.12	-1.7
3,225,400	+		DZA65_RS14800	0.12	-0.1
3,225,401	-		DZA65_RS14800	0.12	-0.2
3,225,404	-		DZA65_RS14800	0.12	+0.9
3,225,404	-		DZA65_RS14800	0.12	-1.6
3,225,435	+		DZA65_RS14800	0.16	-1.0
3,225,435	+		DZA65_RS14800	0.16	-0.1
3,225,436	-		DZA65_RS14800	0.16	-0.5
3,225,436	-		DZA65_RS14800	0.16	-0.9
3,225,436	-		DZA65_RS14800	0.16	-1.1
3,225,436	-		DZA65_RS14800	0.16	+1.3
3,225,436	-		DZA65_RS14800	0.16	-1.7
3,225,436	-		DZA65_RS14800	0.16	-1.1
3,225,471	+		DZA65_RS14800	0.19	+0.6
3,225,471	+		DZA65_RS14800	0.19	-0.5
3,225,471	+		DZA65_RS14800	0.19	-1.7
3,225,472	-		DZA65_RS14800	0.19	-1.1
3,225,472	-		DZA65_RS14800	0.19	+0.4
3,225,472	-		DZA65_RS14800	0.19	-0.3
3,225,472	-		DZA65_RS14800	0.19	-0.7
3,225,472	-		DZA65_RS14800	0.19	+0.9
3,225,531	+		DZA65_RS14800	0.25	-1.3
3,225,553	+		DZA65_RS14800	0.28	-0.6
3,225,554	-		DZA65_RS14800	0.28	-1.1
3,225,554	-		DZA65_RS14800	0.28	-0.4
3,225,575	-		DZA65_RS14800	0.30	-0.7
3,225,598	+		DZA65_RS14800	0.32	+2.4
3,225,599	-		DZA65_RS14800	0.32	+0.5
3,225,677	+		DZA65_RS14800	0.40	-1.1
3,225,677	+		DZA65_RS14800	0.40	-0.9
3,225,677	+		DZA65_RS14800	0.40	-0.4
3,225,677	+		DZA65_RS14800	0.40	-1.5
3,225,677	+		DZA65_RS14800	0.40	-0.7
3,225,678	-		DZA65_RS14800	0.40	-0.4
3,225,727	+		DZA65_RS14800	0.45	-0.7
3,225,727	+		DZA65_RS14800	0.45	-0.6
3,225,728	-		DZA65_RS14800	0.45	-0.1
3,225,728	-		DZA65_RS14800	0.45	-1.1
3,225,728	-		DZA65_RS14800	0.45	-2.0
3,225,728	-		DZA65_RS14800	0.45	-0.5
3,225,784	+		DZA65_RS14800	0.51	+0.4
3,225,785	-		DZA65_RS14800	0.51	-1.5
3,225,785	-		DZA65_RS14800	0.51	-1.0
3,225,794	-		DZA65_RS14800	0.52	-1.9
3,225,794	-		DZA65_RS14800	0.52	-0.7
3,225,794	-		DZA65_RS14800	0.52	+0.1
3,225,794	-		DZA65_RS14800	0.52	-1.3
3,225,831	+		DZA65_RS14800	0.56	+0.0
3,225,831	+		DZA65_RS14800	0.56	-1.9
3,225,832	-		DZA65_RS14800	0.56	-0.5
3,225,832	-		DZA65_RS14800	0.56	-1.5
3,225,907	-		DZA65_RS14800	0.64	-0.3
3,226,009	+		DZA65_RS14800	0.74	+0.9
3,226,023	+		DZA65_RS14800	0.75	-0.7
3,226,023	+		DZA65_RS14800	0.75	+1.3
3,226,023	+		DZA65_RS14800	0.75	-0.0
3,226,023	+		DZA65_RS14800	0.75	-1.5
3,226,024	-		DZA65_RS14800	0.76	-2.2
3,226,024	-		DZA65_RS14800	0.76	-1.5
3,226,024	-		DZA65_RS14800	0.76	-0.8
3,226,024	-		DZA65_RS14800	0.76	+1.1
3,226,024	-		DZA65_RS14800	0.76	+1.4
3,226,027	+		DZA65_RS14800	0.76	-1.2
3,226,027	+		DZA65_RS14800	0.76	-1.0
3,226,027	+		DZA65_RS14800	0.76	+0.3
3,226,028	-		DZA65_RS14800	0.76	+0.4
3,226,028	-		DZA65_RS14800	0.76	-1.7
3,226,028	-		DZA65_RS14800	0.76	-1.0
3,226,030	+		DZA65_RS14800	0.76	-0.6
3,226,031	-		DZA65_RS14800	0.76	-0.6
3,226,031	-		DZA65_RS14800	0.76	+0.3
3,226,138	+		DZA65_RS14800	0.87	-0.2
3,226,145	-		DZA65_RS14800	0.88	-0.1
3,226,168	+				+0.9
3,226,227	+				-0.7
3,226,228	-				-1.5
3,226,241	-				+0.9
3,226,249	+				-0.2
3,226,252	+				+0.9
3,226,268	-				+0.3
3,226,281	+				-0.6
3,226,282	-				+1.2
3,226,371	+				+0.4
3,226,371	+				-0.7
3,226,371	+				+0.5
3,226,372	-				-0.5
3,226,372	-				-0.8
3,226,507	+				-0.5
3,226,536	+				+0.4
3,226,549	-				+0.1
3,226,554	+				-0.9
3,226,558	+				-1.9
3,226,558	+				-2.6
3,226,558	+				+0.9
3,226,595	+				-1.1
3,226,610	+				-0.9
3,226,610	+				-0.5
3,226,611	-				-1.3
3,226,669	+				-1.1
3,226,670	-				+0.3
3,226,801	+		DZA65_RS14805	0.14	+0.9
3,226,801	+		DZA65_RS14805	0.14	-0.7
3,226,801	+		DZA65_RS14805	0.14	+0.9
3,226,802	-		DZA65_RS14805	0.14	+0.9
3,226,802	-		DZA65_RS14805	0.14	-0.3
3,226,816	+		DZA65_RS14805	0.16	-1.5
3,226,817	-		DZA65_RS14805	0.16	-2.6
3,226,817	-		DZA65_RS14805	0.16	+0.4
3,226,817	-		DZA65_RS14805	0.16	-2.1
3,226,817	-		DZA65_RS14805	0.16	+2.2
3,226,880	-		DZA65_RS14805	0.23	-1.5
3,226,907	+		DZA65_RS14805	0.26	-0.9
3,226,907	+		DZA65_RS14805	0.26	-3.1
3,226,908	-		DZA65_RS14805	0.26	+0.2
3,226,908	-		DZA65_RS14805	0.26	+0.2
3,226,908	-		DZA65_RS14805	0.26	+0.9
3,226,928	+		DZA65_RS14805	0.28	-0.9
3,226,928	+		DZA65_RS14805	0.28	-2.1
3,226,928	+		DZA65_RS14805	0.28	+3.4
3,226,928	+		DZA65_RS14805	0.28	-0.1
3,226,928	+				-1.1
3,226,929	-		DZA65_RS14805	0.28	-1.3
3,226,929	-		DZA65_RS14805	0.28	-1.1
3,226,929	-		DZA65_RS14805	0.28	-1.6
3,226,929	-		DZA65_RS14805	0.28	-1.5
3,227,012	+		DZA65_RS14805	0.37	-0.7
3,227,012	+		DZA65_RS14805	0.37	+0.4
3,227,013	-		DZA65_RS14805	0.37	-1.8
3,227,013	-		DZA65_RS14805	0.37	-2.0
3,227,150	+		DZA65_RS14805	0.52	-2.3
3,227,150	+		DZA65_RS14805	0.52	-0.7