Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12245

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,616,061	+		DZA65_RS12235	0.74	+0.4
2,616,062	-		DZA65_RS12235	0.74	+1.0
2,616,222	-		DZA65_RS12235	0.87	+0.5
2,616,263	-				-0.2
2,616,547	-		DZA65_RS12240	0.26	-0.6
2,616,547	-		DZA65_RS12240	0.26	-0.6
2,616,547	-		DZA65_RS12240	0.26	-1.2
2,616,816	+		DZA65_RS12240	0.67	-0.8
2,616,816	+		DZA65_RS12240	0.67	-1.0
2,616,816	+		DZA65_RS12240	0.67	-0.7
2,616,816	+		DZA65_RS12240	0.67	+0.8
2,616,817	-		DZA65_RS12240	0.67	-1.8
2,616,850	+		DZA65_RS12240	0.72	-1.5
2,616,851	-		DZA65_RS12240	0.72	+1.2
2,616,851	-		DZA65_RS12240	0.72	-0.3
2,616,864	+		DZA65_RS12240	0.74	+0.8
2,616,864	+		DZA65_RS12240	0.74	-0.4
2,616,864	+		DZA65_RS12240	0.74	+1.0
2,616,864	+		DZA65_RS12240	0.74	+0.2
2,616,864	+		DZA65_RS12240	0.74	-0.5
2,616,865	-		DZA65_RS12240	0.74	-1.2
2,616,865	-		DZA65_RS12240	0.74	-1.2
2,616,865	-		DZA65_RS12240	0.74	+1.8
2,616,865	-		DZA65_RS12240	0.74	+1.4
2,616,865	-		DZA65_RS12240	0.74	-0.3
2,616,876	-		DZA65_RS12240	0.76	-1.4
2,617,017	+				+0.6
2,617,017	+				-1.2
2,617,017	+				-0.9
2,617,017	+				-1.0
2,617,017	+				-1.2
2,617,018	-				-0.8
2,617,018	-				-0.3
2,617,018	-				+1.4
2,617,018	-				-0.8
2,617,018	-				-0.8
2,617,023	+				+0.1
2,617,023	+				-0.9
2,617,024	-				+0.4
2,617,024	-				+0.8
2,617,176	-		DZA65_RS12245	0.52	-2.2
2,617,273	-		DZA65_RS12245	0.90	-1.0
2,617,273	-		DZA65_RS12245	0.90	-1.9
2,617,311	+				-0.8
2,617,312	-				-0.5
2,617,333	+				-1.0
2,617,333	+				+0.6
2,617,334	-				-0.0
2,617,334	-				-1.2
2,617,338	-				+1.1
2,617,346	-				+1.1
2,617,350	-				-0.4
2,617,379	+				-0.5
2,617,421	-		DZA65_RS12250	0.14	+0.6
2,617,710	+		DZA65_RS12250	0.50	+0.6
2,617,710	+		DZA65_RS12250	0.50	-1.8
2,617,710	+		DZA65_RS12250	0.50	+0.3
2,617,710	+		DZA65_RS12250	0.50	+0.1
2,617,710	+		DZA65_RS12250	0.50	-1.0
2,617,710	+		DZA65_RS12250	0.50	+0.8
2,617,710	+		DZA65_RS12250	0.50	+1.5
2,617,710	+		DZA65_RS12250	0.50	-0.6
2,617,710	+		DZA65_RS12250	0.50	+0.3
2,617,710	+		DZA65_RS12250	0.50	-2.0
2,617,711	-		DZA65_RS12250	0.50	-0.8
2,617,711	-		DZA65_RS12250	0.50	+0.5
2,617,711	-		DZA65_RS12250	0.50	+0.2
2,617,753	+		DZA65_RS12250	0.55	-1.5
2,617,753	+		DZA65_RS12250	0.55	-0.2
2,617,761	+		DZA65_RS12250	0.56	+0.0
2,617,761	+		DZA65_RS12250	0.56	-0.7
2,617,761	+		DZA65_RS12250	0.56	-1.5
2,617,761	+		DZA65_RS12250	0.56	-0.5
2,617,762	-		DZA65_RS12250	0.57	-2.0
2,617,762	-		DZA65_RS12250	0.57	+0.6
2,617,762	-		DZA65_RS12250	0.57	-0.0
2,617,762	-		DZA65_RS12250	0.57	-0.5
2,617,794	+		DZA65_RS12250	0.61	+0.6
2,617,795	-		DZA65_RS12250	0.61	-0.2
2,617,831	+		DZA65_RS12250	0.65	-1.2
2,617,831	+		DZA65_RS12250	0.65	-0.1
2,617,831	+		DZA65_RS12250	0.65	-0.5
2,617,832	-		DZA65_RS12250	0.65	-0.2
2,617,832	-		DZA65_RS12250	0.65	-0.2
2,617,832	-		DZA65_RS12250	0.65	-0.5
2,617,835	+		DZA65_RS12250	0.66	+0.2
2,617,835	+		DZA65_RS12250	0.66	-0.7
2,617,836	-		DZA65_RS12250	0.66	-1.4
2,617,836	-		DZA65_RS12250	0.66	-0.6
2,617,940	+		DZA65_RS12250	0.79	-0.5
2,617,941	-		DZA65_RS12250	0.79	+0.2
2,617,941	-		DZA65_RS12250	0.79	+0.3
2,617,961	+		DZA65_RS12250	0.81	-2.2
2,617,961	+		DZA65_RS12250	0.81	-0.7
2,617,961	+		DZA65_RS12250	0.81	+0.2
2,617,961	+		DZA65_RS12250	0.81	+0.1
2,617,961	+		DZA65_RS12250	0.81	-1.0
2,617,961	+		DZA65_RS12250	0.81	+1.8
2,617,961	+		DZA65_RS12250	0.81	-0.1
2,617,961	+		DZA65_RS12250	0.81	+0.3
2,617,961	+		DZA65_RS12250	0.81	-1.7
2,617,962	-		DZA65_RS12250	0.81	+0.3
2,617,962	-		DZA65_RS12250	0.81	-0.2
2,617,962	-		DZA65_RS12250	0.81	-0.7
2,617,962	-		DZA65_RS12250	0.81	-0.4
2,617,962	-		DZA65_RS12250	0.81	-0.8
2,617,962	-		DZA65_RS12250	0.81	+1.2
2,617,962	-		DZA65_RS12250	0.81	+0.8
2,617,962	-				-0.2
2,618,016	-		DZA65_RS12250	0.88	-1.7
2,618,016	-		DZA65_RS12250	0.88	-1.5
2,618,127	+				-0.1
2,618,128	-				+0.8
2,618,128	-				-1.8
2,618,128	-				-0.6
2,618,128	-				-0.1
2,618,128	-				+0.4
2,618,128	-				-0.2
2,618,128	-				-0.9
2,618,128	-				-1.3
2,618,136	+				-2.6
2,618,251	+				-1.5
2,618,252	-				-1.5
2,618,252	-				-0.0
2,618,252	-				+0.2