Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS07695 and DZA65_RS07700 are separated by 14 nucleotides DZA65_RS07700 and DZA65_RS07705 are separated by 11 nucleotides
DZA65_RS07695: DZA65_RS07695 - type VI secretion system tip protein VgrG, at 1,599,019 to 1,600,872
_RS07695
DZA65_RS07700: DZA65_RS07700 - DUF1795 domain-containing protein, at 1,600,887 to 1,601,294
_RS07700
DZA65_RS07705: DZA65_RS07705 - type IV secretion protein Rhs, at 1,601,306 to 1,605,265
_RS07705
Position (kb) 1600
1601
1602 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1600.044 kb on - strand, within DZA65_RS07695 at 1600.099 kb on + strand, within DZA65_RS07695 at 1600.099 kb on + strand, within DZA65_RS07695 at 1600.100 kb on - strand, within DZA65_RS07695 at 1600.100 kb on - strand, within DZA65_RS07695 at 1600.162 kb on + strand, within DZA65_RS07695 at 1600.162 kb on + strand, within DZA65_RS07695 at 1600.162 kb on + strand, within DZA65_RS07695 at 1600.163 kb on - strand, within DZA65_RS07695 at 1600.163 kb on - strand, within DZA65_RS07695 at 1600.171 kb on - strand, within DZA65_RS07695 at 1600.542 kb on + strand, within DZA65_RS07695 at 1600.695 kb on + strand at 1600.695 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.890 kb on + strand at 1600.890 kb on + strand at 1600.890 kb on + strand at 1600.890 kb on + strand at 1600.891 kb on - strand at 1600.891 kb on - strand at 1600.891 kb on - strand at 1601.031 kb on + strand, within DZA65_RS07700 at 1601.031 kb on + strand, within DZA65_RS07700 at 1601.031 kb on + strand, within DZA65_RS07700 at 1601.133 kb on + strand, within DZA65_RS07700 at 1601.133 kb on + strand, within DZA65_RS07700 at 1601.133 kb on + strand, within DZA65_RS07700 at 1601.134 kb on - strand, within DZA65_RS07700 at 1601.134 kb on - strand, within DZA65_RS07700 at 1601.134 kb on - strand, within DZA65_RS07700 at 1601.134 kb on - strand, within DZA65_RS07700 at 1601.134 kb on - strand, within DZA65_RS07700 at 1601.134 kb on - strand, within DZA65_RS07700 at 1601.135 kb on + strand, within DZA65_RS07700 at 1601.135 kb on + strand, within DZA65_RS07700 at 1601.135 kb on + strand, within DZA65_RS07700 at 1601.136 kb on - strand, within DZA65_RS07700 at 1601.211 kb on - strand, within DZA65_RS07700 at 1601.318 kb on - strand at 1601.458 kb on + strand at 1601.459 kb on - strand at 1601.589 kb on + strand at 1601.589 kb on + strand at 1601.637 kb on + strand at 1601.637 kb on + strand at 1601.637 kb on + strand at 1601.637 kb on + strand at 1601.638 kb on - strand at 1601.761 kb on + strand, within DZA65_RS07705 at 1601.761 kb on + strand, within DZA65_RS07705 at 1601.857 kb on + strand, within DZA65_RS07705 at 1601.857 kb on + strand, within DZA65_RS07705 at 1601.927 kb on + strand, within DZA65_RS07705 at 1601.927 kb on + strand, within DZA65_RS07705 at 1601.927 kb on + strand, within DZA65_RS07705 at 1601.927 kb on + strand, within DZA65_RS07705 at 1601.927 kb on + strand, within DZA65_RS07705 at 1601.927 kb on + strand, within DZA65_RS07705 at 1601.927 kb on + strand, within DZA65_RS07705 at 1601.927 kb on + strand, within DZA65_RS07705 at 1601.927 kb on + strand, within DZA65_RS07705 at 1601.928 kb on - strand, within DZA65_RS07705 at 1601.928 kb on - strand, within DZA65_RS07705 at 1601.928 kb on - strand, within DZA65_RS07705 at 1601.928 kb on - strand, within DZA65_RS07705 at 1601.928 kb on - strand, within DZA65_RS07705 at 1601.928 kb on - strand, within DZA65_RS07705 at 1601.928 kb on - strand, within DZA65_RS07705 at 1601.928 kb on - strand, within DZA65_RS07705 at 1601.928 kb on - strand, within DZA65_RS07705 at 1601.950 kb on + strand, within DZA65_RS07705 at 1602.200 kb on + strand, within DZA65_RS07705 at 1602.200 kb on + strand, within DZA65_RS07705 at 1602.201 kb on - strand, within DZA65_RS07705 at 1602.201 kb on - strand, within DZA65_RS07705 at 1602.282 kb on - strand, within DZA65_RS07705
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,600,044 - DZA65_RS07695 0.55 -1.7 1,600,099 + DZA65_RS07695 0.58 -0.3 1,600,099 + DZA65_RS07695 0.58 -0.3 1,600,100 - DZA65_RS07695 0.58 -1.1 1,600,100 - DZA65_RS07695 0.58 -0.7 1,600,162 + DZA65_RS07695 0.62 -0.6 1,600,162 + DZA65_RS07695 0.62 -1.3 1,600,162 + DZA65_RS07695 0.62 -0.7 1,600,163 - DZA65_RS07695 0.62 +0.5 1,600,163 - DZA65_RS07695 0.62 +0.0 1,600,171 - DZA65_RS07695 0.62 +0.9 1,600,542 + DZA65_RS07695 0.82 -0.9 1,600,695 + +0.3 1,600,695 + -0.7 1,600,886 + -1.4 1,600,886 + -0.7 1,600,886 + -2.6 1,600,886 + +0.1 1,600,886 + -1.4 1,600,886 + -0.1 1,600,886 + +0.9 1,600,886 + +1.2 1,600,886 + +0.5 1,600,886 + -1.1 1,600,886 + +0.3 1,600,886 + -0.2 1,600,886 + -2.6 1,600,886 + +0.5 1,600,886 + +0.2 1,600,886 + -1.4 1,600,886 + -0.5 1,600,886 + -0.1 1,600,886 + +1.7 1,600,886 + +1.3 1,600,886 + -0.5 1,600,886 + -0.7 1,600,887 - -1.1 1,600,887 - -1.1 1,600,887 - +0.1 1,600,887 - -0.3 1,600,887 - -1.6 1,600,887 - -0.3 1,600,887 - +0.9 1,600,887 - +0.3 1,600,887 - -2.4 1,600,887 - -1.1 1,600,887 - +1.9 1,600,887 - -2.7 1,600,887 - -1.3 1,600,887 - +1.3 1,600,887 - +0.3 1,600,887 - -0.1 1,600,887 - -1.4 1,600,887 - -0.4 1,600,887 - -1.9 1,600,887 - +0.6 1,600,887 - -1.1 1,600,887 - -0.4 1,600,887 - +2.5 1,600,887 - +0.3 1,600,887 - -0.4 1,600,887 - -0.4 1,600,887 - -0.6 1,600,887 - -0.1 1,600,887 - +0.3 1,600,887 - -0.9 1,600,887 - +0.4 1,600,887 - -1.1 1,600,887 - +0.6 1,600,890 + -1.1 1,600,890 + -1.1 1,600,890 + +0.3 1,600,890 + -0.7 1,600,891 - -2.7 1,600,891 - +0.7 1,600,891 - -0.4 1,601,031 + DZA65_RS07700 0.35 -0.7 1,601,031 + DZA65_RS07700 0.35 -2.1 1,601,031 + DZA65_RS07700 0.35 +0.1 1,601,133 + DZA65_RS07700 0.60 +0.1 1,601,133 + DZA65_RS07700 0.60 -0.3 1,601,133 + DZA65_RS07700 0.60 -0.3 1,601,134 - DZA65_RS07700 0.61 +0.9 1,601,134 - DZA65_RS07700 0.61 -0.7 1,601,134 - DZA65_RS07700 0.61 -0.7 1,601,134 - DZA65_RS07700 0.61 +1.2 1,601,134 - DZA65_RS07700 0.61 -0.3 1,601,134 - DZA65_RS07700 0.61 -0.2 1,601,135 + DZA65_RS07700 0.61 +1.5 1,601,135 + DZA65_RS07700 0.61 -0.1 1,601,135 + DZA65_RS07700 0.61 +0.6 1,601,136 - DZA65_RS07700 0.61 +0.3 1,601,211 - DZA65_RS07700 0.79 +0.9 1,601,318 - +0.5 1,601,458 + -1.1 1,601,459 - -0.5 1,601,589 + +0.0 1,601,589 + -0.9 1,601,637 + -1.9 1,601,637 + -1.1 1,601,637 + +0.9 1,601,637 + -1.1 1,601,638 - +0.4 1,601,761 + DZA65_RS07705 0.11 -0.4 1,601,761 + DZA65_RS07705 0.11 -0.5 1,601,857 + DZA65_RS07705 0.14 -0.9 1,601,857 + DZA65_RS07705 0.14 +0.3 1,601,927 + DZA65_RS07705 0.16 +0.6 1,601,927 + DZA65_RS07705 0.16 -0.9 1,601,927 + DZA65_RS07705 0.16 +1.3 1,601,927 + DZA65_RS07705 0.16 +0.2 1,601,927 + DZA65_RS07705 0.16 -0.2 1,601,927 + DZA65_RS07705 0.16 -0.5 1,601,927 + DZA65_RS07705 0.16 -0.2 1,601,927 + DZA65_RS07705 0.16 +0.1 1,601,927 + DZA65_RS07705 0.16 +2.5 1,601,928 - DZA65_RS07705 0.16 -0.3 1,601,928 - DZA65_RS07705 0.16 +0.9 1,601,928 - DZA65_RS07705 0.16 -1.4 1,601,928 - DZA65_RS07705 0.16 -0.4 1,601,928 - DZA65_RS07705 0.16 -0.7 1,601,928 - DZA65_RS07705 0.16 -2.7 1,601,928 - DZA65_RS07705 0.16 -0.4 1,601,928 - DZA65_RS07705 0.16 +0.9 1,601,928 - DZA65_RS07705 0.16 -1.2 1,601,950 + DZA65_RS07705 0.16 +0.1 1,602,200 + DZA65_RS07705 0.23 -0.9 1,602,200 + DZA65_RS07705 0.23 +0.3 1,602,201 - DZA65_RS07705 0.23 -2.6 1,602,201 - DZA65_RS07705 0.23 -2.0 1,602,282 - DZA65_RS07705 0.25 -0.5
Or see this region's nucleotide sequence