Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07145

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS07140 and DZA65_RS07145 are separated by 79 nucleotidesDZA65_RS07145 and DZA65_RS07150 are separated by 141 nucleotides DZA65_RS07140: DZA65_RS07140 - glycosyltransferase, at 1,482,706 to 1,483,563 _RS07140 DZA65_RS07145: DZA65_RS07145 - glycosyltransferase family 2 protein, at 1,483,643 to 1,484,551 _RS07145 DZA65_RS07150: DZA65_RS07150 - hypothetical protein, at 1,484,693 to 1,486,252 _RS07150 Position (kb) 1483 1484 1485Strain fitness (log2 ratio) -2 -1 0 1at 1482.681 kb on + strandat 1482.684 kb on - strandat 1482.702 kb on + strandat 1482.737 kb on - strandat 1483.559 kb on + strandat 1483.562 kb on - strandat 1483.573 kb on + strandat 1484.726 kb on + strandat 1484.854 kb on + strand, within DZA65_RS07150at 1484.859 kb on + strand, within DZA65_RS07150at 1484.864 kb on - strand, within DZA65_RS07150at 1485.301 kb on - strand, within DZA65_RS07150at 1485.359 kb on + strand, within DZA65_RS07150at 1485.359 kb on + strand, within DZA65_RS07150at 1485.360 kb on - strand, within DZA65_RS07150at 1485.437 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,482,681 + +0.2
1,482,684 - -2.1
1,482,702 + -0.1
1,482,737 - -0.7
1,483,559 + -0.1
1,483,562 - -0.3
1,483,573 + -1.1
1,484,726 + -0.7
1,484,854 + DZA65_RS07150 0.10 -0.8
1,484,859 + DZA65_RS07150 0.11 -1.6
1,484,864 - DZA65_RS07150 0.11 +0.2
1,485,301 - DZA65_RS07150 0.39 -0.7
1,485,359 + DZA65_RS07150 0.43 +0.6
1,485,359 + DZA65_RS07150 0.43 -0.7
1,485,360 - DZA65_RS07150 0.43 -2.1
1,485,437 + -1.1

Or see this region's nucleotide sequence