Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05740

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS05725 and DZA65_RS05735 are separated by 113 nucleotidesDZA65_RS05735 and DZA65_RS05740 overlap by 2 nucleotidesDZA65_RS05740 and DZA65_RS05745 are separated by 194 nucleotides DZA65_RS05725: DZA65_RS05725 - N-acetyltransferase, at 1,177,234 to 1,177,764 _RS05725 DZA65_RS05735: DZA65_RS05735 - MFS transporter, at 1,177,878 to 1,178,402 _RS05735 DZA65_RS05740: DZA65_RS05740 - M20/M25/M40 family metallo-hydrolase, at 1,178,401 to 1,179,141 _RS05740 DZA65_RS05745: DZA65_RS05745 - LysR family transcriptional regulator, at 1,179,336 to 1,180,277 _RS05745 Position (kb) 1178 1179 1180Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1177.436 kb on - strand, within DZA65_RS05725at 1177.441 kb on + strand, within DZA65_RS05725at 1177.441 kb on + strand, within DZA65_RS05725at 1177.494 kb on + strand, within DZA65_RS05725at 1177.494 kb on + strand, within DZA65_RS05725at 1177.494 kb on + strand, within DZA65_RS05725at 1177.494 kb on + strand, within DZA65_RS05725at 1177.494 kb on + strand, within DZA65_RS05725at 1177.494 kb on + strand, within DZA65_RS05725at 1177.495 kb on - strand, within DZA65_RS05725at 1177.495 kb on - strand, within DZA65_RS05725at 1177.495 kb on - strand, within DZA65_RS05725at 1177.495 kb on - strand, within DZA65_RS05725at 1177.495 kb on - strand, within DZA65_RS05725at 1177.495 kb on - strand, within DZA65_RS05725at 1177.495 kb on - strand, within DZA65_RS05725at 1177.495 kb on - strand, within DZA65_RS05725at 1177.495 kb on - strand, within DZA65_RS05725at 1177.498 kb on + strand, within DZA65_RS05725at 1177.498 kb on + strand, within DZA65_RS05725at 1177.498 kb on + strand, within DZA65_RS05725at 1177.498 kb on + strand, within DZA65_RS05725at 1177.498 kb on + strand, within DZA65_RS05725at 1177.498 kb on + strand, within DZA65_RS05725at 1177.498 kb on + strand, within DZA65_RS05725at 1177.499 kb on - strand, within DZA65_RS05725at 1177.499 kb on - strand, within DZA65_RS05725at 1177.499 kb on - strand, within DZA65_RS05725at 1177.499 kb on - strand, within DZA65_RS05725at 1177.533 kb on + strand, within DZA65_RS05725at 1177.816 kb on + strandat 1177.817 kb on - strandat 1177.817 kb on - strandat 1177.817 kb on - strandat 1177.817 kb on - strandat 1177.836 kb on - strandat 1177.836 kb on - strandat 1177.836 kb on - strandat 1177.920 kb on + strandat 1177.920 kb on + strandat 1177.921 kb on - strandat 1177.921 kb on - strandat 1177.921 kb on - strandat 1177.921 kb on - strandat 1177.942 kb on + strand, within DZA65_RS05735at 1177.942 kb on + strand, within DZA65_RS05735at 1177.943 kb on - strand, within DZA65_RS05735at 1177.943 kb on - strand, within DZA65_RS05735at 1177.943 kb on - strand, within DZA65_RS05735at 1177.943 kb on - strand, within DZA65_RS05735at 1177.943 kb on - strand, within DZA65_RS05735at 1177.943 kb on - strand, within DZA65_RS05735at 1177.945 kb on + strand, within DZA65_RS05735at 1177.945 kb on + strand, within DZA65_RS05735at 1177.945 kb on + strand, within DZA65_RS05735at 1177.945 kb on + strand, within DZA65_RS05735at 1177.946 kb on - strand, within DZA65_RS05735at 1177.946 kb on - strand, within DZA65_RS05735at 1177.946 kb on - strand, within DZA65_RS05735at 1177.988 kb on + strand, within DZA65_RS05735at 1177.988 kb on + strand, within DZA65_RS05735at 1177.988 kb on + strand, within DZA65_RS05735at 1177.988 kb on + strand, within DZA65_RS05735at 1177.988 kb on + strand, within DZA65_RS05735at 1177.988 kb on + strand, within DZA65_RS05735at 1177.988 kb on + strand, within DZA65_RS05735at 1177.989 kb on - strand, within DZA65_RS05735at 1177.989 kb on - strand, within DZA65_RS05735at 1177.989 kb on - strand, within DZA65_RS05735at 1177.989 kb on - strand, within DZA65_RS05735at 1177.989 kb on - strand, within DZA65_RS05735at 1177.989 kb on - strand, within DZA65_RS05735at 1177.989 kb on - strand, within DZA65_RS05735at 1177.989 kb on - strandat 1177.989 kb on - strand, within DZA65_RS05735at 1178.035 kb on + strand, within DZA65_RS05735at 1178.035 kb on + strand, within DZA65_RS05735at 1178.035 kb on + strand, within DZA65_RS05735at 1178.035 kb on + strand, within DZA65_RS05735at 1178.035 kb on + strand, within DZA65_RS05735at 1178.035 kb on + strand, within DZA65_RS05735at 1178.036 kb on - strand, within DZA65_RS05735at 1178.036 kb on - strand, within DZA65_RS05735at 1178.036 kb on - strand, within DZA65_RS05735at 1178.036 kb on - strand, within DZA65_RS05735at 1178.036 kb on - strand, within DZA65_RS05735at 1178.036 kb on - strand, within DZA65_RS05735at 1178.036 kb on - strand, within DZA65_RS05735at 1178.111 kb on + strand, within DZA65_RS05735at 1178.111 kb on + strand, within DZA65_RS05735at 1178.111 kb on + strand, within DZA65_RS05735at 1178.112 kb on - strand, within DZA65_RS05735at 1178.146 kb on + strand, within DZA65_RS05735at 1178.156 kb on + strand, within DZA65_RS05735at 1178.157 kb on - strand, within DZA65_RS05735at 1178.157 kb on - strand, within DZA65_RS05735at 1178.157 kb on - strand, within DZA65_RS05735at 1178.157 kb on - strand, within DZA65_RS05735at 1178.162 kb on + strand, within DZA65_RS05735at 1178.162 kb on + strand, within DZA65_RS05735at 1178.163 kb on - strand, within DZA65_RS05735at 1178.163 kb on - strand, within DZA65_RS05735at 1178.186 kb on + strand, within DZA65_RS05735at 1178.186 kb on + strand, within DZA65_RS05735at 1178.187 kb on - strand, within DZA65_RS05735at 1178.187 kb on - strand, within DZA65_RS05735at 1178.187 kb on - strand, within DZA65_RS05735at 1178.187 kb on - strand, within DZA65_RS05735at 1178.237 kb on - strand, within DZA65_RS05735at 1178.353 kb on + strandat 1178.353 kb on + strandat 1178.353 kb on + strandat 1178.354 kb on - strandat 1178.354 kb on - strandat 1178.371 kb on + strandat 1178.480 kb on + strand, within DZA65_RS05740at 1178.480 kb on + strand, within DZA65_RS05740at 1178.736 kb on + strand, within DZA65_RS05740at 1178.737 kb on - strand, within DZA65_RS05740at 1178.737 kb on - strand, within DZA65_RS05740at 1178.742 kb on + strand, within DZA65_RS05740at 1178.742 kb on + strand, within DZA65_RS05740at 1178.743 kb on - strand, within DZA65_RS05740at 1178.743 kb on - strand, within DZA65_RS05740at 1178.780 kb on + strand, within DZA65_RS05740at 1179.008 kb on + strand, within DZA65_RS05740at 1179.009 kb on - strand, within DZA65_RS05740at 1179.009 kb on - strand, within DZA65_RS05740at 1179.016 kb on + strand, within DZA65_RS05740at 1179.016 kb on + strand, within DZA65_RS05740at 1179.016 kb on + strand, within DZA65_RS05740at 1179.016 kb on + strand, within DZA65_RS05740at 1179.016 kb on + strand, within DZA65_RS05740at 1179.017 kb on - strand, within DZA65_RS05740at 1179.017 kb on - strand, within DZA65_RS05740at 1179.017 kb on - strand, within DZA65_RS05740at 1179.017 kb on - strand, within DZA65_RS05740at 1179.017 kb on - strand, within DZA65_RS05740at 1179.017 kb on - strand, within DZA65_RS05740at 1179.063 kb on + strand, within DZA65_RS05740at 1179.076 kb on + strandat 1179.105 kb on - strandat 1179.123 kb on + strandat 1179.123 kb on + strandat 1179.173 kb on + strandat 1179.214 kb on + strandat 1179.215 kb on - strandat 1179.237 kb on + strandat 1179.237 kb on + strandat 1179.237 kb on + strandat 1179.237 kb on + strandat 1179.238 kb on - strandat 1179.238 kb on - strandat 1179.238 kb on - strandat 1179.238 kb on - strandat 1179.269 kb on - strandat 1179.296 kb on + strandat 1179.341 kb on + strandat 1179.342 kb on - strandat 1179.342 kb on - strandat 1179.357 kb on + strandat 1179.357 kb on + strandat 1179.377 kb on + strandat 1179.428 kb on + strandat 1179.431 kb on + strand, within DZA65_RS05745at 1179.431 kb on + strand, within DZA65_RS05745at 1179.724 kb on + strand, within DZA65_RS05745at 1180.014 kb on + strand, within DZA65_RS05745at 1180.014 kb on + strand, within DZA65_RS05745at 1180.014 kb on + strand, within DZA65_RS05745at 1180.015 kb on - strand, within DZA65_RS05745at 1180.015 kb on - strand, within DZA65_RS05745at 1180.017 kb on + strand, within DZA65_RS05745at 1180.017 kb on + strand, within DZA65_RS05745at 1180.018 kb on - strand, within DZA65_RS05745at 1180.018 kb on - strand, within DZA65_RS05745at 1180.018 kb on - strand, within DZA65_RS05745at 1180.018 kb on - strand, within DZA65_RS05745at 1180.018 kb on - strand, within DZA65_RS05745at 1180.074 kb on + strand, within DZA65_RS05745

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,177,436 - DZA65_RS05725 0.38 -1.5
1,177,441 + DZA65_RS05725 0.39 -0.3
1,177,441 + DZA65_RS05725 0.39 +0.7
1,177,494 + DZA65_RS05725 0.49 -0.3
1,177,494 + DZA65_RS05725 0.49 -0.4
1,177,494 + DZA65_RS05725 0.49 -0.0
1,177,494 + DZA65_RS05725 0.49 -0.5
1,177,494 + DZA65_RS05725 0.49 +0.7
1,177,494 + DZA65_RS05725 0.49 -2.0
1,177,495 - DZA65_RS05725 0.49 +0.6
1,177,495 - DZA65_RS05725 0.49 -1.1
1,177,495 - DZA65_RS05725 0.49 +0.4
1,177,495 - DZA65_RS05725 0.49 +1.3
1,177,495 - DZA65_RS05725 0.49 -0.1
1,177,495 - DZA65_RS05725 0.49 -0.3
1,177,495 - DZA65_RS05725 0.49 -0.6
1,177,495 - DZA65_RS05725 0.49 -0.3
1,177,495 - DZA65_RS05725 0.49 -1.3
1,177,498 + DZA65_RS05725 0.50 -1.0
1,177,498 + DZA65_RS05725 0.50 -1.2
1,177,498 + DZA65_RS05725 0.50 -1.0
1,177,498 + DZA65_RS05725 0.50 -2.7
1,177,498 + DZA65_RS05725 0.50 -0.0
1,177,498 + DZA65_RS05725 0.50 -0.6
1,177,498 + DZA65_RS05725 0.50 -0.2
1,177,499 - DZA65_RS05725 0.50 -1.2
1,177,499 - DZA65_RS05725 0.50 -1.0
1,177,499 - DZA65_RS05725 0.50 -0.6
1,177,499 - DZA65_RS05725 0.50 -1.4
1,177,533 + DZA65_RS05725 0.56 -0.6
1,177,816 + -0.8
1,177,817 - -0.5
1,177,817 - -0.6
1,177,817 - -0.0
1,177,817 - -1.2
1,177,836 - -0.0
1,177,836 - -0.0
1,177,836 - -0.6
1,177,920 + +0.4
1,177,920 + +0.4
1,177,921 - -2.0
1,177,921 - -1.1
1,177,921 - -0.6
1,177,921 - +0.4
1,177,942 + DZA65_RS05735 0.12 +2.0
1,177,942 + DZA65_RS05735 0.12 +1.0
1,177,943 - DZA65_RS05735 0.12 +1.0
1,177,943 - DZA65_RS05735 0.12 +0.1
1,177,943 - DZA65_RS05735 0.12 -0.2
1,177,943 - DZA65_RS05735 0.12 -1.2
1,177,943 - DZA65_RS05735 0.12 -0.6
1,177,943 - DZA65_RS05735 0.12 -0.6
1,177,945 + DZA65_RS05735 0.13 -0.6
1,177,945 + DZA65_RS05735 0.13 -0.5
1,177,945 + DZA65_RS05735 0.13 -0.9
1,177,945 + DZA65_RS05735 0.13 +0.4
1,177,946 - DZA65_RS05735 0.13 -0.6
1,177,946 - DZA65_RS05735 0.13 -0.0
1,177,946 - DZA65_RS05735 0.13 -0.0
1,177,988 + DZA65_RS05735 0.21 -0.6
1,177,988 + DZA65_RS05735 0.21 -0.8
1,177,988 + DZA65_RS05735 0.21 +0.4
1,177,988 + DZA65_RS05735 0.21 +0.3
1,177,988 + DZA65_RS05735 0.21 -2.0
1,177,988 + DZA65_RS05735 0.21 +1.0
1,177,988 + DZA65_RS05735 0.21 -0.4
1,177,989 - DZA65_RS05735 0.21 -0.6
1,177,989 - DZA65_RS05735 0.21 +0.2
1,177,989 - DZA65_RS05735 0.21 -2.2
1,177,989 - DZA65_RS05735 0.21 +0.7
1,177,989 - DZA65_RS05735 0.21 -2.0
1,177,989 - DZA65_RS05735 0.21 -0.6
1,177,989 - DZA65_RS05735 0.21 +0.2
1,177,989 - +1.6
1,177,989 - DZA65_RS05735 0.21 -1.3
1,178,035 + DZA65_RS05735 0.30 -0.6
1,178,035 + DZA65_RS05735 0.30 -1.1
1,178,035 + DZA65_RS05735 0.30 -1.0
1,178,035 + DZA65_RS05735 0.30 -1.6
1,178,035 + DZA65_RS05735 0.30 -1.0
1,178,035 + DZA65_RS05735 0.30 +2.0
1,178,036 - DZA65_RS05735 0.30 -1.0
1,178,036 - DZA65_RS05735 0.30 -0.0
1,178,036 - DZA65_RS05735 0.30 -0.9
1,178,036 - DZA65_RS05735 0.30 -1.3
1,178,036 - DZA65_RS05735 0.30 +1.0
1,178,036 - DZA65_RS05735 0.30 -1.4
1,178,036 - DZA65_RS05735 0.30 -0.3
1,178,111 + DZA65_RS05735 0.44 +0.4
1,178,111 + DZA65_RS05735 0.44 +1.6
1,178,111 + DZA65_RS05735 0.44 -1.0
1,178,112 - DZA65_RS05735 0.45 -0.6
1,178,146 + DZA65_RS05735 0.51 -2.0
1,178,156 + DZA65_RS05735 0.53 +0.2
1,178,157 - DZA65_RS05735 0.53 -0.0
1,178,157 - DZA65_RS05735 0.53 -2.3
1,178,157 - DZA65_RS05735 0.53 -0.0
1,178,157 - DZA65_RS05735 0.53 +0.7
1,178,162 + DZA65_RS05735 0.54 -0.6
1,178,162 + DZA65_RS05735 0.54 +0.4
1,178,163 - DZA65_RS05735 0.54 -0.0
1,178,163 - DZA65_RS05735 0.54 +1.5
1,178,186 + DZA65_RS05735 0.59 -1.0
1,178,186 + DZA65_RS05735 0.59 -0.5
1,178,187 - DZA65_RS05735 0.59 +1.6
1,178,187 - DZA65_RS05735 0.59 -0.0
1,178,187 - DZA65_RS05735 0.59 +0.2
1,178,187 - DZA65_RS05735 0.59 -1.6
1,178,237 - DZA65_RS05735 0.68 -0.5
1,178,353 + +0.8
1,178,353 + -1.3
1,178,353 + -0.6
1,178,354 - +1.0
1,178,354 - -0.9
1,178,371 + -0.8
1,178,480 + DZA65_RS05740 0.11 -0.7
1,178,480 + DZA65_RS05740 0.11 -1.6
1,178,736 + DZA65_RS05740 0.45 -0.3
1,178,737 - DZA65_RS05740 0.45 -0.4
1,178,737 - DZA65_RS05740 0.45 -1.5
1,178,742 + DZA65_RS05740 0.46 +0.1
1,178,742 + DZA65_RS05740 0.46 -0.8
1,178,743 - DZA65_RS05740 0.46 -2.0
1,178,743 - DZA65_RS05740 0.46 +0.7
1,178,780 + DZA65_RS05740 0.51 -1.3
1,179,008 + DZA65_RS05740 0.82 -0.3
1,179,009 - DZA65_RS05740 0.82 -0.0
1,179,009 - DZA65_RS05740 0.82 -0.7
1,179,016 + DZA65_RS05740 0.83 +0.3
1,179,016 + DZA65_RS05740 0.83 -0.6
1,179,016 + DZA65_RS05740 0.83 -1.8
1,179,016 + DZA65_RS05740 0.83 +0.4
1,179,016 + DZA65_RS05740 0.83 +1.0
1,179,017 - DZA65_RS05740 0.83 +0.6
1,179,017 - DZA65_RS05740 0.83 +0.6
1,179,017 - DZA65_RS05740 0.83 +3.0
1,179,017 - DZA65_RS05740 0.83 -0.9
1,179,017 - DZA65_RS05740 0.83 +0.7
1,179,017 - DZA65_RS05740 0.83 +1.2
1,179,063 + DZA65_RS05740 0.89 -0.5
1,179,076 + -0.6
1,179,105 - +1.0
1,179,123 + +0.8
1,179,123 + -0.0
1,179,173 + -0.6
1,179,214 + -0.3
1,179,215 - -0.6
1,179,237 + -1.3
1,179,237 + -1.8
1,179,237 + -1.6
1,179,237 + +0.3
1,179,238 - +0.8
1,179,238 - -0.3
1,179,238 - -1.3
1,179,238 - -1.0
1,179,269 - -0.2
1,179,296 + -0.3
1,179,341 + +0.6
1,179,342 - +1.6
1,179,342 - -1.8
1,179,357 + +1.0
1,179,357 + -0.0
1,179,377 + +2.0
1,179,428 + +0.2
1,179,431 + DZA65_RS05745 0.10 -2.3
1,179,431 + DZA65_RS05745 0.10 -1.8
1,179,724 + DZA65_RS05745 0.41 +0.6
1,180,014 + DZA65_RS05745 0.72 -0.1
1,180,014 + DZA65_RS05745 0.72 -0.0
1,180,014 + DZA65_RS05745 0.72 -0.0
1,180,015 - DZA65_RS05745 0.72 -2.0
1,180,015 - DZA65_RS05745 0.72 +0.8
1,180,017 + DZA65_RS05745 0.72 -1.9
1,180,017 + DZA65_RS05745 0.72 -1.0
1,180,018 - DZA65_RS05745 0.72 -1.3
1,180,018 - DZA65_RS05745 0.72 -0.6
1,180,018 - DZA65_RS05745 0.72 -0.3
1,180,018 - DZA65_RS05745 0.72 +0.8
1,180,018 - DZA65_RS05745 0.72 -1.7
1,180,074 + DZA65_RS05745 0.78 +0.3

Or see this region's nucleotide sequence