Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05490

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS05480 and DZA65_RS05485 are separated by 9 nucleotidesDZA65_RS05485 and DZA65_RS05490 are separated by 21 nucleotidesDZA65_RS05490 and DZA65_RS05495 are separated by 34 nucleotides DZA65_RS05480: DZA65_RS05480 - (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase, at 1,127,184 to 1,127,945 _RS05480 DZA65_RS05485: DZA65_RS05485 - phosphatidate cytidylyltransferase, at 1,127,955 to 1,128,812 _RS05485 DZA65_RS05490: DZA65_RS05490 - sigma E protease regulator RseP, at 1,128,834 to 1,130,189 _RS05490 DZA65_RS05495: DZA65_RS05495 - outer membrane protein assembly factor BamA, at 1,130,224 to 1,132,641 _RS05495 Position (kb) 1128 1129 1130 1131Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1127.943 kb on + strandat 1128.816 kb on + strandat 1128.833 kb on + strandat 1128.833 kb on + strandat 1128.833 kb on + strandat 1128.834 kb on - strandat 1128.834 kb on - strandat 1128.842 kb on + strandat 1128.842 kb on + strandat 1128.842 kb on + strandat 1128.843 kb on - strandat 1128.843 kb on - strandat 1128.843 kb on - strandat 1128.866 kb on + strandat 1128.867 kb on - strandat 1128.887 kb on + strandat 1128.887 kb on + strandat 1128.887 kb on + strandat 1128.895 kb on + strandat 1128.895 kb on + strandat 1128.895 kb on + strandat 1128.895 kb on + strandat 1128.895 kb on + strandat 1128.895 kb on + strandat 1128.895 kb on + strandat 1128.896 kb on - strandat 1128.896 kb on - strandat 1128.896 kb on - strandat 1128.976 kb on + strand, within DZA65_RS05490at 1129.008 kb on + strand, within DZA65_RS05490at 1129.008 kb on + strand, within DZA65_RS05490at 1129.008 kb on + strand, within DZA65_RS05490at 1129.009 kb on - strand, within DZA65_RS05490at 1129.009 kb on - strand, within DZA65_RS05490at 1129.038 kb on + strand, within DZA65_RS05490at 1129.038 kb on + strand, within DZA65_RS05490at 1129.106 kb on + strand, within DZA65_RS05490at 1129.106 kb on + strand, within DZA65_RS05490at 1129.106 kb on + strand, within DZA65_RS05490at 1129.106 kb on + strand, within DZA65_RS05490at 1129.106 kb on + strand, within DZA65_RS05490at 1129.106 kb on + strand, within DZA65_RS05490at 1129.106 kb on + strand, within DZA65_RS05490at 1129.107 kb on - strand, within DZA65_RS05490at 1129.107 kb on - strand, within DZA65_RS05490at 1129.107 kb on - strand, within DZA65_RS05490at 1129.107 kb on - strand, within DZA65_RS05490at 1129.107 kb on - strand, within DZA65_RS05490at 1129.179 kb on + strand, within DZA65_RS05490at 1129.193 kb on + strand, within DZA65_RS05490at 1129.193 kb on + strand, within DZA65_RS05490at 1129.194 kb on - strand, within DZA65_RS05490at 1129.237 kb on + strand, within DZA65_RS05490at 1129.238 kb on - strand, within DZA65_RS05490at 1129.247 kb on + strand, within DZA65_RS05490at 1129.285 kb on + strand, within DZA65_RS05490at 1129.285 kb on + strand, within DZA65_RS05490at 1129.285 kb on + strand, within DZA65_RS05490at 1129.285 kb on + strand, within DZA65_RS05490at 1129.286 kb on - strand, within DZA65_RS05490at 1129.286 kb on - strand, within DZA65_RS05490at 1129.286 kb on - strand, within DZA65_RS05490at 1129.286 kb on - strand, within DZA65_RS05490at 1129.286 kb on - strand, within DZA65_RS05490at 1129.286 kb on - strand, within DZA65_RS05490at 1129.286 kb on - strand, within DZA65_RS05490at 1129.286 kb on - strand, within DZA65_RS05490at 1129.286 kb on - strand, within DZA65_RS05490at 1129.387 kb on + strand, within DZA65_RS05490at 1129.388 kb on - strand, within DZA65_RS05490at 1129.388 kb on - strand, within DZA65_RS05490at 1129.388 kb on - strand, within DZA65_RS05490at 1129.394 kb on + strand, within DZA65_RS05490at 1129.394 kb on + strand, within DZA65_RS05490at 1129.394 kb on + strand, within DZA65_RS05490at 1129.395 kb on - strand, within DZA65_RS05490at 1129.395 kb on - strand, within DZA65_RS05490at 1129.395 kb on - strand, within DZA65_RS05490at 1129.395 kb on - strand, within DZA65_RS05490at 1129.395 kb on - strand, within DZA65_RS05490at 1129.395 kb on - strand, within DZA65_RS05490at 1129.400 kb on + strand, within DZA65_RS05490at 1129.401 kb on - strand, within DZA65_RS05490at 1129.779 kb on + strand, within DZA65_RS05490at 1129.781 kb on + strand, within DZA65_RS05490at 1129.781 kb on + strand, within DZA65_RS05490at 1129.818 kb on + strand, within DZA65_RS05490at 1129.818 kb on + strand, within DZA65_RS05490at 1129.818 kb on + strand, within DZA65_RS05490at 1129.818 kb on + strand, within DZA65_RS05490at 1129.818 kb on + strand, within DZA65_RS05490at 1129.865 kb on + strand, within DZA65_RS05490at 1129.865 kb on + strand, within DZA65_RS05490at 1129.943 kb on + strand, within DZA65_RS05490at 1129.943 kb on + strand, within DZA65_RS05490at 1129.943 kb on + strand, within DZA65_RS05490at 1129.943 kb on + strand, within DZA65_RS05490at 1129.956 kb on + strand, within DZA65_RS05490at 1129.968 kb on + strand, within DZA65_RS05490at 1129.968 kb on + strand, within DZA65_RS05490at 1129.968 kb on + strand, within DZA65_RS05490at 1129.968 kb on + strand, within DZA65_RS05490at 1129.968 kb on + strand, within DZA65_RS05490at 1129.971 kb on + strand, within DZA65_RS05490at 1129.971 kb on + strand, within DZA65_RS05490at 1129.971 kb on + strand, within DZA65_RS05490at 1129.971 kb on + strand, within DZA65_RS05490at 1129.971 kb on + strand, within DZA65_RS05490at 1130.114 kb on + strandat 1130.114 kb on + strandat 1130.114 kb on + strandat 1130.149 kb on + strandat 1130.187 kb on + strandat 1130.187 kb on + strandat 1130.187 kb on + strandat 1130.187 kb on + strandat 1130.216 kb on + strandat 1130.216 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,127,943 + -1.0
1,128,816 + +1.0
1,128,833 + -1.3
1,128,833 + -0.6
1,128,833 + -0.6
1,128,834 - -0.0
1,128,834 - -0.4
1,128,842 + +0.2
1,128,842 + +0.2
1,128,842 + -0.4
1,128,843 - -0.0
1,128,843 - -1.0
1,128,843 - -1.3
1,128,866 + -0.3
1,128,867 - -1.3
1,128,887 + +0.5
1,128,887 + -2.6
1,128,887 + -0.7
1,128,895 + +0.7
1,128,895 + -0.3
1,128,895 + -1.6
1,128,895 + -1.6
1,128,895 + -0.5
1,128,895 + -0.8
1,128,895 + -0.0
1,128,896 - -2.0
1,128,896 - -1.8
1,128,896 - -1.2
1,128,976 + DZA65_RS05490 0.10 -0.4
1,129,008 + DZA65_RS05490 0.13 -0.7
1,129,008 + DZA65_RS05490 0.13 -0.2
1,129,008 + DZA65_RS05490 0.13 -0.6
1,129,009 - DZA65_RS05490 0.13 -1.6
1,129,009 - DZA65_RS05490 0.13 -2.2
1,129,038 + DZA65_RS05490 0.15 -0.3
1,129,038 + DZA65_RS05490 0.15 +0.6
1,129,106 + DZA65_RS05490 0.20 -1.1
1,129,106 + DZA65_RS05490 0.20 -0.0
1,129,106 + DZA65_RS05490 0.20 +0.2
1,129,106 + DZA65_RS05490 0.20 -0.9
1,129,106 + DZA65_RS05490 0.20 +0.4
1,129,106 + DZA65_RS05490 0.20 +1.4
1,129,106 + DZA65_RS05490 0.20 +0.2
1,129,107 - DZA65_RS05490 0.20 -0.6
1,129,107 - DZA65_RS05490 0.20 -0.6
1,129,107 - DZA65_RS05490 0.20 -0.3
1,129,107 - DZA65_RS05490 0.20 -1.3
1,129,107 - DZA65_RS05490 0.20 -0.6
1,129,179 + DZA65_RS05490 0.25 -1.1
1,129,193 + DZA65_RS05490 0.26 -0.7
1,129,193 + DZA65_RS05490 0.26 +0.3
1,129,194 - DZA65_RS05490 0.27 -0.8
1,129,237 + DZA65_RS05490 0.30 -0.5
1,129,238 - DZA65_RS05490 0.30 -0.2
1,129,247 + DZA65_RS05490 0.30 -2.0
1,129,285 + DZA65_RS05490 0.33 -2.8
1,129,285 + DZA65_RS05490 0.33 -0.3
1,129,285 + DZA65_RS05490 0.33 -1.0
1,129,285 + DZA65_RS05490 0.33 +0.3
1,129,286 - DZA65_RS05490 0.33 -2.9
1,129,286 - DZA65_RS05490 0.33 -2.9
1,129,286 - DZA65_RS05490 0.33 -0.0
1,129,286 - DZA65_RS05490 0.33 -0.0
1,129,286 - DZA65_RS05490 0.33 -1.3
1,129,286 - DZA65_RS05490 0.33 -0.4
1,129,286 - DZA65_RS05490 0.33 +1.6
1,129,286 - DZA65_RS05490 0.33 -1.3
1,129,286 - DZA65_RS05490 0.33 -1.6
1,129,387 + DZA65_RS05490 0.41 +1.0
1,129,388 - DZA65_RS05490 0.41 -0.6
1,129,388 - DZA65_RS05490 0.41 -1.7
1,129,388 - DZA65_RS05490 0.41 -2.3
1,129,394 + DZA65_RS05490 0.41 +0.4
1,129,394 + DZA65_RS05490 0.41 +2.6
1,129,394 + DZA65_RS05490 0.41 -0.6
1,129,395 - DZA65_RS05490 0.41 -0.3
1,129,395 - DZA65_RS05490 0.41 -0.5
1,129,395 - DZA65_RS05490 0.41 -0.7
1,129,395 - DZA65_RS05490 0.41 -0.9
1,129,395 - DZA65_RS05490 0.41 -0.8
1,129,395 - DZA65_RS05490 0.41 -0.6
1,129,400 + DZA65_RS05490 0.42 +1.1
1,129,401 - DZA65_RS05490 0.42 -0.0
1,129,779 + DZA65_RS05490 0.70 -0.3
1,129,781 + DZA65_RS05490 0.70 +0.5
1,129,781 + DZA65_RS05490 0.70 +0.2
1,129,818 + DZA65_RS05490 0.73 +1.3
1,129,818 + DZA65_RS05490 0.73 -1.3
1,129,818 + DZA65_RS05490 0.73 -1.0
1,129,818 + DZA65_RS05490 0.73 +0.1
1,129,818 + DZA65_RS05490 0.73 -0.0
1,129,865 + DZA65_RS05490 0.76 -0.3
1,129,865 + DZA65_RS05490 0.76 -0.2
1,129,943 + DZA65_RS05490 0.82 -0.9
1,129,943 + DZA65_RS05490 0.82 -1.6
1,129,943 + DZA65_RS05490 0.82 -0.2
1,129,943 + DZA65_RS05490 0.82 -0.4
1,129,956 + DZA65_RS05490 0.83 +0.2
1,129,968 + DZA65_RS05490 0.84 -1.4
1,129,968 + DZA65_RS05490 0.84 -2.0
1,129,968 + DZA65_RS05490 0.84 -1.0
1,129,968 + DZA65_RS05490 0.84 -1.2
1,129,968 + DZA65_RS05490 0.84 +0.3
1,129,971 + DZA65_RS05490 0.84 -1.3
1,129,971 + DZA65_RS05490 0.84 -1.6
1,129,971 + DZA65_RS05490 0.84 +2.6
1,129,971 + DZA65_RS05490 0.84 -0.9
1,129,971 + DZA65_RS05490 0.84 -0.6
1,130,114 + -0.9
1,130,114 + -1.3
1,130,114 + +0.7
1,130,149 + -0.0
1,130,187 + -1.3
1,130,187 + +0.3
1,130,187 + -0.0
1,130,187 + -0.8
1,130,216 + -0.3
1,130,216 + -0.6

Or see this region's nucleotide sequence