Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04695 and DZA65_RS04700 are separated by 308 nucleotides DZA65_RS04700 and DZA65_RS04705 overlap by 11 nucleotides DZA65_RS04705 and DZA65_RS04710 are separated by 307 nucleotides
DZA65_RS04695: DZA65_RS04695 - IS110 family transposase, at 977,675 to 978,679
_RS04695
DZA65_RS04700: DZA65_RS04700 - transposase, at 978,988 to 979,191
_RS04700
DZA65_RS04705: DZA65_RS04705 - transposase, at 979,181 to 979,800
_RS04705
DZA65_RS04710: DZA65_RS04710 - IS110 family transposase, at 980,108 to 981,111
_RS04710
Position (kb) 978
979
980 Strain fitness (log2 ratio) -2
-1
0
1 at 978.909 kb on + strand at 978.909 kb on + strand at 978.909 kb on + strand at 978.909 kb on + strand at 978.909 kb on + strand at 978.956 kb on - strand at 978.956 kb on - strand at 978.956 kb on - strand at 978.988 kb on - strand at 979.170 kb on + strand, within DZA65_RS04700 at 979.178 kb on - strand at 979.253 kb on - strand, within DZA65_RS04705 at 979.716 kb on + strand, within DZA65_RS04705
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 978,909 + +1.0 978,909 + -0.3 978,909 + -0.5 978,909 + -1.8 978,909 + -2.3 978,956 - +1.0 978,956 - -1.8 978,956 - -0.0 978,988 - -0.9 979,170 + DZA65_RS04700 0.89 +0.3 979,178 - +0.1 979,253 - DZA65_RS04705 0.12 +0.6 979,716 + DZA65_RS04705 0.86 -0.4
Or see this region's nucleotide sequence