Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04400

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS04395 and DZA65_RS04400 are separated by 76 nucleotidesDZA65_RS04400 and DZA65_RS04405 are separated by 131 nucleotides DZA65_RS04395: DZA65_RS04395 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 916,487 to 917,140 _RS04395 DZA65_RS04400: DZA65_RS04400 - SAM-dependent methyltransferase TehB, at 917,217 to 918,080 _RS04400 DZA65_RS04405: DZA65_RS04405 - NADH:flavorubredoxin reductase NorW, at 918,212 to 919,369 _RS04405 Position (kb) 917 918 919Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 916.315 kb on + strandat 916.336 kb on + strandat 916.466 kb on + strandat 917.128 kb on + strandat 917.142 kb on + strandat 917.142 kb on + strandat 917.143 kb on - strandat 917.143 kb on - strandat 917.172 kb on + strandat 917.172 kb on + strandat 917.172 kb on + strandat 917.173 kb on - strandat 917.173 kb on - strandat 917.173 kb on - strandat 917.173 kb on - strandat 917.335 kb on + strand, within DZA65_RS04400at 917.338 kb on + strand, within DZA65_RS04400at 917.338 kb on + strand, within DZA65_RS04400at 917.338 kb on + strand, within DZA65_RS04400at 917.338 kb on + strand, within DZA65_RS04400at 917.338 kb on + strand, within DZA65_RS04400at 917.339 kb on - strand, within DZA65_RS04400at 917.339 kb on - strand, within DZA65_RS04400at 917.339 kb on - strand, within DZA65_RS04400at 917.339 kb on - strand, within DZA65_RS04400at 917.427 kb on - strand, within DZA65_RS04400at 917.428 kb on + strand, within DZA65_RS04400at 917.428 kb on + strand, within DZA65_RS04400at 917.428 kb on + strand, within DZA65_RS04400at 917.428 kb on + strand, within DZA65_RS04400at 917.429 kb on - strandat 917.456 kb on + strand, within DZA65_RS04400at 917.456 kb on + strand, within DZA65_RS04400at 917.457 kb on - strand, within DZA65_RS04400at 917.457 kb on - strand, within DZA65_RS04400at 917.457 kb on - strand, within DZA65_RS04400at 917.457 kb on - strand, within DZA65_RS04400at 917.457 kb on - strand, within DZA65_RS04400at 917.503 kb on - strand, within DZA65_RS04400at 917.503 kb on - strand, within DZA65_RS04400at 917.503 kb on - strand, within DZA65_RS04400at 917.514 kb on + strand, within DZA65_RS04400at 917.515 kb on - strand, within DZA65_RS04400at 917.528 kb on - strand, within DZA65_RS04400at 917.541 kb on - strand, within DZA65_RS04400at 917.606 kb on + strand, within DZA65_RS04400at 917.607 kb on - strand, within DZA65_RS04400at 917.607 kb on - strand, within DZA65_RS04400at 917.607 kb on - strand, within DZA65_RS04400at 917.607 kb on - strand, within DZA65_RS04400at 917.607 kb on - strand, within DZA65_RS04400at 917.674 kb on + strand, within DZA65_RS04400at 917.675 kb on - strand, within DZA65_RS04400at 917.675 kb on - strand, within DZA65_RS04400at 917.731 kb on + strand, within DZA65_RS04400at 917.732 kb on - strand, within DZA65_RS04400at 917.732 kb on - strand, within DZA65_RS04400at 917.732 kb on - strand, within DZA65_RS04400at 917.732 kb on - strand, within DZA65_RS04400at 917.777 kb on - strand, within DZA65_RS04400at 917.777 kb on - strand, within DZA65_RS04400at 917.788 kb on + strandat 917.788 kb on + strand, within DZA65_RS04400at 917.788 kb on + strand, within DZA65_RS04400at 917.789 kb on - strand, within DZA65_RS04400at 917.789 kb on - strand, within DZA65_RS04400at 917.789 kb on - strand, within DZA65_RS04400at 917.789 kb on - strand, within DZA65_RS04400at 917.791 kb on + strand, within DZA65_RS04400at 917.791 kb on + strand, within DZA65_RS04400at 917.791 kb on + strand, within DZA65_RS04400at 917.791 kb on + strand, within DZA65_RS04400at 917.791 kb on + strand, within DZA65_RS04400at 917.791 kb on + strand, within DZA65_RS04400at 917.792 kb on - strand, within DZA65_RS04400at 917.792 kb on - strand, within DZA65_RS04400at 917.792 kb on - strand, within DZA65_RS04400at 917.792 kb on - strand, within DZA65_RS04400at 917.792 kb on - strand, within DZA65_RS04400at 917.792 kb on - strand, within DZA65_RS04400at 917.792 kb on - strand, within DZA65_RS04400at 917.809 kb on + strand, within DZA65_RS04400at 917.809 kb on + strand, within DZA65_RS04400at 917.809 kb on + strand, within DZA65_RS04400at 917.809 kb on + strand, within DZA65_RS04400at 917.810 kb on - strand, within DZA65_RS04400at 917.810 kb on - strand, within DZA65_RS04400at 917.810 kb on - strand, within DZA65_RS04400at 917.876 kb on + strand, within DZA65_RS04400at 917.877 kb on - strand, within DZA65_RS04400at 917.878 kb on + strand, within DZA65_RS04400at 917.878 kb on + strand, within DZA65_RS04400at 917.879 kb on - strand, within DZA65_RS04400at 917.879 kb on - strand, within DZA65_RS04400at 917.879 kb on - strand, within DZA65_RS04400at 917.879 kb on - strand, within DZA65_RS04400at 917.938 kb on - strand, within DZA65_RS04400at 917.973 kb on + strand, within DZA65_RS04400at 917.973 kb on + strand, within DZA65_RS04400at 918.059 kb on + strandat 918.059 kb on + strandat 918.060 kb on - strandat 918.060 kb on - strandat 918.060 kb on - strandat 918.060 kb on - strandat 918.060 kb on - strandat 918.060 kb on - strandat 918.060 kb on - strandat 918.061 kb on + strandat 918.061 kb on + strandat 918.062 kb on - strandat 918.062 kb on - strandat 918.062 kb on - strandat 918.081 kb on - strandat 918.081 kb on - strandat 918.101 kb on + strandat 918.101 kb on + strandat 918.102 kb on - strandat 918.103 kb on + strandat 918.103 kb on + strandat 918.104 kb on - strandat 918.104 kb on - strandat 918.104 kb on - strandat 918.110 kb on - strandat 918.110 kb on - strandat 918.114 kb on + strandat 918.114 kb on + strandat 918.114 kb on + strandat 918.114 kb on + strandat 918.114 kb on + strandat 918.115 kb on - strandat 918.115 kb on - strandat 918.115 kb on - strandat 918.117 kb on + strandat 918.118 kb on - strandat 918.143 kb on + strandat 918.148 kb on - strandat 918.213 kb on + strandat 918.213 kb on + strandat 918.213 kb on + strandat 918.213 kb on + strandat 918.213 kb on + strandat 918.213 kb on + strandat 918.214 kb on - strandat 918.214 kb on - strandat 918.214 kb on - strandat 918.214 kb on - strandat 918.214 kb on - strandat 918.214 kb on - strandat 918.214 kb on - strandat 918.214 kb on - strandat 918.214 kb on - strandat 918.214 kb on - strandat 918.214 kb on - strandat 918.214 kb on - strandat 918.311 kb on + strandat 918.377 kb on + strand, within DZA65_RS04405at 918.377 kb on + strand, within DZA65_RS04405at 918.377 kb on + strand, within DZA65_RS04405at 918.378 kb on - strand, within DZA65_RS04405at 918.403 kb on + strand, within DZA65_RS04405at 918.463 kb on + strand, within DZA65_RS04405at 918.463 kb on + strand, within DZA65_RS04405at 918.464 kb on - strand, within DZA65_RS04405at 918.464 kb on - strand, within DZA65_RS04405at 918.464 kb on - strand, within DZA65_RS04405at 918.466 kb on + strand, within DZA65_RS04405at 918.473 kb on - strand, within DZA65_RS04405at 918.473 kb on - strand, within DZA65_RS04405at 918.475 kb on + strand, within DZA65_RS04405at 918.475 kb on + strand, within DZA65_RS04405at 918.475 kb on + strand, within DZA65_RS04405at 918.475 kb on + strand, within DZA65_RS04405at 918.475 kb on + strand, within DZA65_RS04405at 918.475 kb on + strand, within DZA65_RS04405at 918.475 kb on + strand, within DZA65_RS04405at 918.476 kb on - strand, within DZA65_RS04405at 918.476 kb on - strand, within DZA65_RS04405at 918.476 kb on - strand, within DZA65_RS04405at 918.476 kb on - strand, within DZA65_RS04405at 918.476 kb on - strand, within DZA65_RS04405at 918.476 kb on - strand, within DZA65_RS04405at 918.564 kb on + strand, within DZA65_RS04405at 918.564 kb on + strand, within DZA65_RS04405at 918.564 kb on + strand, within DZA65_RS04405at 918.565 kb on - strand, within DZA65_RS04405at 918.618 kb on - strand, within DZA65_RS04405at 918.715 kb on + strandat 918.715 kb on + strand, within DZA65_RS04405at 918.715 kb on + strand, within DZA65_RS04405at 918.716 kb on - strand, within DZA65_RS04405at 918.716 kb on - strand, within DZA65_RS04405at 918.761 kb on - strand, within DZA65_RS04405at 918.932 kb on + strand, within DZA65_RS04405at 918.932 kb on + strand, within DZA65_RS04405at 918.933 kb on - strand, within DZA65_RS04405at 918.979 kb on - strand, within DZA65_RS04405at 919.071 kb on + strand, within DZA65_RS04405at 919.072 kb on - strand, within DZA65_RS04405at 919.077 kb on + strand, within DZA65_RS04405at 919.077 kb on + strand, within DZA65_RS04405at 919.077 kb on + strand, within DZA65_RS04405at 919.077 kb on + strand, within DZA65_RS04405at 919.078 kb on - strand, within DZA65_RS04405at 919.078 kb on - strand, within DZA65_RS04405at 919.078 kb on - strand, within DZA65_RS04405at 919.078 kb on - strand, within DZA65_RS04405at 919.078 kb on - strand, within DZA65_RS04405at 919.078 kb on - strand, within DZA65_RS04405at 919.078 kb on - strand, within DZA65_RS04405at 919.078 kb on - strand, within DZA65_RS04405at 919.078 kb on - strand, within DZA65_RS04405at 919.078 kb on - strand, within DZA65_RS04405at 919.078 kb on - strand, within DZA65_RS04405

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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916,315 + -0.4
916,336 + +1.0
916,466 + +0.4
917,128 + -1.6
917,142 + +0.7
917,142 + -1.6
917,143 - -0.6
917,143 - -0.3
917,172 + +0.3
917,172 + -0.3
917,172 + -0.4
917,173 - -0.2
917,173 - +0.3
917,173 - +1.6
917,173 - +1.3
917,335 + DZA65_RS04400 0.14 -0.5
917,338 + DZA65_RS04400 0.14 -0.3
917,338 + DZA65_RS04400 0.14 +1.6
917,338 + DZA65_RS04400 0.14 -0.8
917,338 + DZA65_RS04400 0.14 +0.4
917,338 + DZA65_RS04400 0.14 -1.0
917,339 - DZA65_RS04400 0.14 -0.6
917,339 - DZA65_RS04400 0.14 -0.6
917,339 - DZA65_RS04400 0.14 -1.5
917,339 - DZA65_RS04400 0.14 -1.3
917,427 - DZA65_RS04400 0.24 -2.8
917,428 + DZA65_RS04400 0.24 +0.7
917,428 + DZA65_RS04400 0.24 +0.3
917,428 + DZA65_RS04400 0.24 -1.0
917,428 + DZA65_RS04400 0.24 -0.8
917,429 - -1.6
917,456 + DZA65_RS04400 0.28 +0.6
917,456 + DZA65_RS04400 0.28 -1.0
917,457 - DZA65_RS04400 0.28 +0.8
917,457 - DZA65_RS04400 0.28 -0.3
917,457 - DZA65_RS04400 0.28 +1.7
917,457 - DZA65_RS04400 0.28 -0.3
917,457 - DZA65_RS04400 0.28 +2.0
917,503 - DZA65_RS04400 0.33 -0.6
917,503 - DZA65_RS04400 0.33 +2.6
917,503 - DZA65_RS04400 0.33 -2.0
917,514 + DZA65_RS04400 0.34 -0.6
917,515 - DZA65_RS04400 0.34 -1.1
917,528 - DZA65_RS04400 0.36 +0.3
917,541 - DZA65_RS04400 0.38 +2.3
917,606 + DZA65_RS04400 0.45 -0.0
917,607 - DZA65_RS04400 0.45 -1.0
917,607 - DZA65_RS04400 0.45 -0.2
917,607 - DZA65_RS04400 0.45 -1.3
917,607 - DZA65_RS04400 0.45 -0.4
917,607 - DZA65_RS04400 0.45 -0.6
917,674 + DZA65_RS04400 0.53 +0.1
917,675 - DZA65_RS04400 0.53 +0.4
917,675 - DZA65_RS04400 0.53 -0.0
917,731 + DZA65_RS04400 0.59 +1.7
917,732 - DZA65_RS04400 0.60 -0.0
917,732 - DZA65_RS04400 0.60 -2.2
917,732 - DZA65_RS04400 0.60 +0.6
917,732 - DZA65_RS04400 0.60 -0.4
917,777 - DZA65_RS04400 0.65 -1.0
917,777 - DZA65_RS04400 0.65 -1.0
917,788 + +1.0
917,788 + DZA65_RS04400 0.66 -0.7
917,788 + DZA65_RS04400 0.66 -1.0
917,789 - DZA65_RS04400 0.66 -0.3
917,789 - DZA65_RS04400 0.66 -0.5
917,789 - DZA65_RS04400 0.66 -1.0
917,789 - DZA65_RS04400 0.66 -1.8
917,791 + DZA65_RS04400 0.66 +1.0
917,791 + DZA65_RS04400 0.66 -1.3
917,791 + DZA65_RS04400 0.66 -1.2
917,791 + DZA65_RS04400 0.66 -0.3
917,791 + DZA65_RS04400 0.66 -0.8
917,791 + DZA65_RS04400 0.66 -0.8
917,792 - DZA65_RS04400 0.67 -1.2
917,792 - DZA65_RS04400 0.67 -1.0
917,792 - DZA65_RS04400 0.67 -0.0
917,792 - DZA65_RS04400 0.67 -0.8
917,792 - DZA65_RS04400 0.67 -0.6
917,792 - DZA65_RS04400 0.67 +0.6
917,792 - DZA65_RS04400 0.67 +2.6
917,809 + DZA65_RS04400 0.69 -1.7
917,809 + DZA65_RS04400 0.69 -1.0
917,809 + DZA65_RS04400 0.69 +1.1
917,809 + DZA65_RS04400 0.69 -2.0
917,810 - DZA65_RS04400 0.69 -1.0
917,810 - DZA65_RS04400 0.69 -0.2
917,810 - DZA65_RS04400 0.69 -0.2
917,876 + DZA65_RS04400 0.76 -1.5
917,877 - DZA65_RS04400 0.76 -1.2
917,878 + DZA65_RS04400 0.77 -0.3
917,878 + DZA65_RS04400 0.77 -0.8
917,879 - DZA65_RS04400 0.77 +0.6
917,879 - DZA65_RS04400 0.77 -0.8
917,879 - DZA65_RS04400 0.77 -1.0
917,879 - DZA65_RS04400 0.77 -1.3
917,938 - DZA65_RS04400 0.83 -1.8
917,973 + DZA65_RS04400 0.88 -0.6
917,973 + DZA65_RS04400 0.88 -1.6
918,059 + -0.6
918,059 + -0.6
918,060 - -1.3
918,060 - -0.0
918,060 - +0.3
918,060 - +2.6
918,060 - +1.4
918,060 - -0.2
918,060 - -0.4
918,061 + +0.1
918,061 + -0.0
918,062 - -2.0
918,062 - -1.6
918,062 - -1.8
918,081 - -0.3
918,081 - -0.7
918,101 + +0.4
918,101 + -0.3
918,102 - -0.3
918,103 + -0.5
918,103 + -0.7
918,104 - -0.3
918,104 - +1.0
918,104 - -0.6
918,110 - +0.1
918,110 - -0.3
918,114 + +0.4
918,114 + +1.0
918,114 + -1.0
918,114 + -0.5
918,114 + +0.4
918,115 - -0.6
918,115 - -0.7
918,115 - +0.3
918,117 + -1.3
918,118 - -0.6
918,143 + +0.3
918,148 - -0.7
918,213 + +0.3
918,213 + -0.9
918,213 + -0.2
918,213 + -1.6
918,213 + -1.0
918,213 + +0.5
918,214 - -0.3
918,214 - +0.6
918,214 - -0.0
918,214 - +1.0
918,214 - -0.0
918,214 - -0.0
918,214 - -0.7
918,214 - +0.3
918,214 - -1.6
918,214 - -0.4
918,214 - -0.3
918,214 - -0.7
918,311 + -1.3
918,377 + DZA65_RS04405 0.14 -0.9
918,377 + DZA65_RS04405 0.14 -0.4
918,377 + DZA65_RS04405 0.14 -0.3
918,378 - DZA65_RS04405 0.14 -0.6
918,403 + DZA65_RS04405 0.16 -1.3
918,463 + DZA65_RS04405 0.22 +0.4
918,463 + DZA65_RS04405 0.22 -0.3
918,464 - DZA65_RS04405 0.22 -1.0
918,464 - DZA65_RS04405 0.22 +0.6
918,464 - DZA65_RS04405 0.22 +1.0
918,466 + DZA65_RS04405 0.22 -2.0
918,473 - DZA65_RS04405 0.23 +2.0
918,473 - DZA65_RS04405 0.23 -0.5
918,475 + DZA65_RS04405 0.23 -0.6
918,475 + DZA65_RS04405 0.23 -0.8
918,475 + DZA65_RS04405 0.23 -0.0
918,475 + DZA65_RS04405 0.23 -1.3
918,475 + DZA65_RS04405 0.23 -1.0
918,475 + DZA65_RS04405 0.23 -1.0
918,475 + DZA65_RS04405 0.23 -2.0
918,476 - DZA65_RS04405 0.23 -1.5
918,476 - DZA65_RS04405 0.23 +3.0
918,476 - DZA65_RS04405 0.23 -0.5
918,476 - DZA65_RS04405 0.23 -1.0
918,476 - DZA65_RS04405 0.23 +0.3
918,476 - DZA65_RS04405 0.23 +1.0
918,564 + DZA65_RS04405 0.30 -1.3
918,564 + DZA65_RS04405 0.30 -0.6
918,564 + DZA65_RS04405 0.30 -0.8
918,565 - DZA65_RS04405 0.30 -0.7
918,618 - DZA65_RS04405 0.35 -0.9
918,715 + +0.4
918,715 + DZA65_RS04405 0.43 -0.0
918,715 + DZA65_RS04405 0.43 -0.0
918,716 - DZA65_RS04405 0.44 +0.3
918,716 - DZA65_RS04405 0.44 -2.6
918,761 - DZA65_RS04405 0.47 +0.3
918,932 + DZA65_RS04405 0.62 -0.0
918,932 + DZA65_RS04405 0.62 -0.6
918,933 - DZA65_RS04405 0.62 -1.0
918,979 - DZA65_RS04405 0.66 -0.0
919,071 + DZA65_RS04405 0.74 -1.6
919,072 - DZA65_RS04405 0.74 -0.0
919,077 + DZA65_RS04405 0.75 -0.8
919,077 + DZA65_RS04405 0.75 -0.1
919,077 + DZA65_RS04405 0.75 -0.0
919,077 + DZA65_RS04405 0.75 -0.7
919,078 - DZA65_RS04405 0.75 -0.5
919,078 - DZA65_RS04405 0.75 +0.4
919,078 - DZA65_RS04405 0.75 -0.3
919,078 - DZA65_RS04405 0.75 -0.6
919,078 - DZA65_RS04405 0.75 -0.6
919,078 - DZA65_RS04405 0.75 +0.3
919,078 - DZA65_RS04405 0.75 +0.1
919,078 - DZA65_RS04405 0.75 -0.9
919,078 - DZA65_RS04405 0.75 -0.3
919,078 - DZA65_RS04405 0.75 -1.1
919,078 - DZA65_RS04405 0.75 -1.3

Or see this region's nucleotide sequence