Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04285 and DZA65_RS04290 are separated by 446 nucleotides DZA65_RS04290 and DZA65_RS04295 are separated by 113 nucleotides DZA65_RS04295 and DZA65_RS04300 are separated by 354 nucleotides
DZA65_RS04285: DZA65_RS04285 - RpoE-regulated lipoprotein, at 894,100 to 894,708
_RS04285
DZA65_RS04290: DZA65_RS04290 - N-glycosyltransferase, at 895,155 to 896,429
_RS04290
DZA65_RS04295: DZA65_RS04295 - transcriptional regulator, at 896,543 to 896,830
_RS04295
DZA65_RS04300: DZA65_RS04300 - LuxR family transcriptional regulator, at 897,185 to 897,874
_RS04300
Position (kb) 895
896
897 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 894.261 kb on + strand, within DZA65_RS04285 at 894.367 kb on + strand, within DZA65_RS04285 at 894.368 kb on - strand, within DZA65_RS04285 at 894.505 kb on + strand, within DZA65_RS04285 at 894.505 kb on + strand, within DZA65_RS04285 at 894.598 kb on + strand, within DZA65_RS04285 at 894.598 kb on + strand, within DZA65_RS04285 at 894.599 kb on - strand, within DZA65_RS04285 at 894.599 kb on - strand, within DZA65_RS04285 at 894.651 kb on + strand at 894.652 kb on - strand at 894.717 kb on + strand at 894.717 kb on + strand at 894.717 kb on + strand at 894.718 kb on - strand at 894.718 kb on - strand at 894.718 kb on - strand at 894.718 kb on - strand at 894.805 kb on + strand at 894.806 kb on - strand at 894.806 kb on - strand at 894.837 kb on + strand at 894.838 kb on - strand at 894.838 kb on - strand at 894.853 kb on - strand at 894.884 kb on + strand at 894.884 kb on + strand at 894.887 kb on + strand at 894.887 kb on + strand at 894.888 kb on - strand at 894.945 kb on + strand at 894.946 kb on - strand at 894.946 kb on - strand at 894.946 kb on - strand at 894.959 kb on + strand at 894.959 kb on + strand at 894.960 kb on - strand at 894.960 kb on - strand at 894.971 kb on + strand at 894.971 kb on + strand at 894.971 kb on + strand at 894.971 kb on + strand at 894.971 kb on + strand at 894.972 kb on - strand at 894.972 kb on - strand at 894.972 kb on - strand at 894.996 kb on + strand at 894.996 kb on + strand at 894.997 kb on - strand at 894.997 kb on - strand at 894.997 kb on - strand at 895.009 kb on - strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.024 kb on - strand at 895.024 kb on - strand at 895.024 kb on - strand at 895.024 kb on - strand at 895.074 kb on - strand at 895.082 kb on + strand at 895.083 kb on - strand at 895.083 kb on - strand at 895.143 kb on + strand at 895.143 kb on + strand at 895.143 kb on + strand at 895.144 kb on - strand at 895.144 kb on - strand at 895.144 kb on - strand at 895.200 kb on + strand at 895.200 kb on + strand at 895.205 kb on + strand at 895.205 kb on + strand at 895.205 kb on + strand at 895.205 kb on + strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.235 kb on + strand at 895.235 kb on + strand at 895.235 kb on + strand at 895.236 kb on - strand at 895.307 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.434 kb on - strand, within DZA65_RS04290 at 895.513 kb on - strand, within DZA65_RS04290 at 895.513 kb on - strand, within DZA65_RS04290 at 895.821 kb on + strand, within DZA65_RS04290 at 895.822 kb on - strand, within DZA65_RS04290 at 896.102 kb on + strand, within DZA65_RS04290 at 896.102 kb on + strand, within DZA65_RS04290 at 896.144 kb on + strand, within DZA65_RS04290 at 896.340 kb on + strand at 896.342 kb on + strand at 896.342 kb on + strand at 896.342 kb on + strand at 896.343 kb on - strand at 896.343 kb on - strand at 896.362 kb on + strand at 896.363 kb on - strand at 896.363 kb on - strand at 896.438 kb on - strand at 896.448 kb on + strand at 896.511 kb on + strand at 896.511 kb on + strand at 896.512 kb on - strand at 896.512 kb on - strand at 896.541 kb on - strand at 896.552 kb on + strand at 896.552 kb on + strand at 896.552 kb on + strand at 896.575 kb on + strand, within DZA65_RS04295 at 896.575 kb on + strand, within DZA65_RS04295 at 896.622 kb on + strand, within DZA65_RS04295 at 896.622 kb on + strand, within DZA65_RS04295 at 896.661 kb on - strand, within DZA65_RS04295 at 896.703 kb on + strand, within DZA65_RS04295 at 896.705 kb on + strand, within DZA65_RS04295 at 896.705 kb on + strand, within DZA65_RS04295 at 896.706 kb on - strand, within DZA65_RS04295 at 896.835 kb on + strand at 896.855 kb on - strand at 896.879 kb on + strand at 896.906 kb on - strand at 896.917 kb on - strand at 896.945 kb on + strand at 896.946 kb on - strand at 896.946 kb on - strand at 896.946 kb on - strand at 896.984 kb on + strand at 896.984 kb on + strand at 896.985 kb on - strand at 896.985 kb on - strand at 896.985 kb on - strand at 896.985 kb on - strand at 896.987 kb on - strand at 897.006 kb on - strand at 897.076 kb on + strand at 897.108 kb on - strand at 897.175 kb on + strand at 897.216 kb on - strand at 897.220 kb on - strand at 897.229 kb on + strand at 897.293 kb on + strand, within DZA65_RS04300 at 897.293 kb on + strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.295 kb on + strand, within DZA65_RS04300 at 897.296 kb on - strand at 897.312 kb on - strand, within DZA65_RS04300 at 897.312 kb on - strand, within DZA65_RS04300 at 897.312 kb on - strand, within DZA65_RS04300 at 897.317 kb on + strand, within DZA65_RS04300 at 897.318 kb on - strand, within DZA65_RS04300 at 897.326 kb on - strand, within DZA65_RS04300
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 894,261 + DZA65_RS04285 0.26 -0.3 894,367 + DZA65_RS04285 0.44 -0.5 894,368 - DZA65_RS04285 0.44 -2.2 894,505 + DZA65_RS04285 0.67 +0.0 894,505 + DZA65_RS04285 0.67 -0.7 894,598 + DZA65_RS04285 0.82 -1.3 894,598 + DZA65_RS04285 0.82 -0.4 894,599 - DZA65_RS04285 0.82 -0.7 894,599 - DZA65_RS04285 0.82 -0.1 894,651 + -0.3 894,652 - -1.3 894,717 + +0.0 894,717 + +1.0 894,717 + +1.0 894,718 - -1.3 894,718 - +0.4 894,718 - -0.2 894,718 - -0.7 894,805 + +2.0 894,806 - -0.3 894,806 - -0.5 894,837 + -0.7 894,838 - -0.7 894,838 - -1.0 894,853 - +1.0 894,884 + -0.2 894,884 + +0.6 894,887 + +0.0 894,887 + +0.4 894,888 - +0.2 894,945 + +0.2 894,946 - +0.3 894,946 - -0.3 894,946 - -1.0 894,959 + -0.6 894,959 + -0.6 894,960 - -1.6 894,960 - +0.2 894,971 + +0.2 894,971 + +2.0 894,971 + -0.1 894,971 + +0.6 894,971 + +0.5 894,972 - +0.3 894,972 - +0.0 894,972 - +1.0 894,996 + +0.6 894,996 + +0.0 894,997 - -1.0 894,997 - -0.1 894,997 - -0.7 895,009 - +0.4 895,023 + -0.9 895,023 + -0.7 895,023 + +1.0 895,023 + +1.0 895,023 + -1.5 895,023 + -2.0 895,023 + +1.5 895,024 - -0.3 895,024 - -1.0 895,024 - +0.2 895,024 - -1.5 895,074 - -0.5 895,082 + -2.7 895,083 - -1.0 895,083 - +0.4 895,143 + -1.3 895,143 + -0.4 895,143 + -0.6 895,144 - +1.0 895,144 - +0.5 895,144 - +1.7 895,200 + +0.2 895,200 + -1.5 895,205 + -0.7 895,205 + +2.2 895,205 + -1.2 895,205 + -0.6 895,206 - +0.7 895,206 - +0.4 895,206 - -0.3 895,206 - -2.0 895,206 - -1.7 895,206 - -1.6 895,206 - -0.3 895,206 - -1.4 895,206 - -0.3 895,235 + -0.8 895,235 + +0.2 895,235 + -0.4 895,236 - -1.3 895,307 + DZA65_RS04290 0.12 -2.2 895,433 + DZA65_RS04290 0.22 -1.3 895,433 + DZA65_RS04290 0.22 +0.4 895,433 + DZA65_RS04290 0.22 -0.1 895,433 + DZA65_RS04290 0.22 -0.7 895,433 + DZA65_RS04290 0.22 -0.8 895,434 - DZA65_RS04290 0.22 -0.6 895,513 - DZA65_RS04290 0.28 -0.3 895,513 - DZA65_RS04290 0.28 +0.0 895,821 + DZA65_RS04290 0.52 -0.3 895,822 - DZA65_RS04290 0.52 -2.0 896,102 + DZA65_RS04290 0.74 +0.6 896,102 + DZA65_RS04290 0.74 -1.2 896,144 + DZA65_RS04290 0.78 -1.0 896,340 + -0.4 896,342 + +0.2 896,342 + -0.8 896,342 + -1.3 896,343 - -0.3 896,343 - +1.0 896,362 + -0.6 896,363 - +0.2 896,363 - +0.2 896,438 - +0.4 896,448 + -0.4 896,511 + -0.1 896,511 + -1.5 896,512 - -0.4 896,512 - -1.3 896,541 - -0.2 896,552 + +0.3 896,552 + -0.6 896,552 + +0.3 896,575 + DZA65_RS04295 0.11 +0.0 896,575 + DZA65_RS04295 0.11 -1.1 896,622 + DZA65_RS04295 0.27 -0.8 896,622 + DZA65_RS04295 0.27 -0.3 896,661 - DZA65_RS04295 0.41 -0.8 896,703 + DZA65_RS04295 0.56 -2.2 896,705 + DZA65_RS04295 0.56 -0.5 896,705 + DZA65_RS04295 0.56 -3.2 896,706 - DZA65_RS04295 0.57 -2.5 896,835 + -0.4 896,855 - +0.0 896,879 + -1.2 896,906 - -0.6 896,917 - -0.6 896,945 + +0.0 896,946 - -0.0 896,946 - -0.2 896,946 - +0.5 896,984 + -1.0 896,984 + -0.3 896,985 - -1.8 896,985 - +0.0 896,985 - -2.9 896,985 - -0.2 896,987 - +0.2 897,006 - -0.6 897,076 + +0.0 897,108 - +1.0 897,175 + +0.0 897,216 - -1.8 897,220 - -1.0 897,229 + -0.7 897,293 + DZA65_RS04300 0.16 -0.7 897,293 + DZA65_RS04300 0.16 -0.3 897,294 - DZA65_RS04300 0.16 -0.5 897,294 - DZA65_RS04300 0.16 -1.0 897,294 - DZA65_RS04300 0.16 +0.0 897,294 - DZA65_RS04300 0.16 -1.0 897,294 - DZA65_RS04300 0.16 -0.6 897,294 - DZA65_RS04300 0.16 +0.0 897,294 - DZA65_RS04300 0.16 -1.0 897,294 - DZA65_RS04300 0.16 -0.9 897,294 - DZA65_RS04300 0.16 -2.0 897,295 + DZA65_RS04300 0.16 +0.2 897,296 - -1.3 897,312 - DZA65_RS04300 0.18 +1.6 897,312 - DZA65_RS04300 0.18 -0.7 897,312 - DZA65_RS04300 0.18 +0.3 897,317 + DZA65_RS04300 0.19 +0.4 897,318 - DZA65_RS04300 0.19 -1.4 897,326 - DZA65_RS04300 0.20 -0.3
Or see this region's nucleotide sequence