Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03210 and DZA65_RS03215 are separated by 54 nucleotides DZA65_RS03215 and DZA65_RS03220 are separated by 59 nucleotides DZA65_RS03220 and DZA65_RS03225 are separated by 218 nucleotides DZA65_RS03225 and DZA65_RS03230 are separated by 21 nucleotides
DZA65_RS03210: DZA65_RS03210 - preprotein translocase subunit SecG, at 682,006 to 682,341
_RS03210
DZA65_RS03215: DZA65_RS03215 - tRNA-Leu, at 682,396 to 682,482
_RS03215
DZA65_RS03220: DZA65_RS03220 - tRNA-Met, at 682,542 to 682,618
_RS03220
DZA65_RS03225: DZA65_RS03225 - ribosome maturation factor RimP, at 682,837 to 683,289
_RS03225
DZA65_RS03230: DZA65_RS03230 - transcription termination/antitermination protein NusA, at 683,311 to 684,801
_RS03230
Position (kb) 682
683
684 Strain fitness (log2 ratio) -2
-1
0
1 at 681.863 kb on - strand at 681.886 kb on + strand at 681.919 kb on + strand at 681.919 kb on + strand at 681.919 kb on + strand at 681.919 kb on + strand at 681.919 kb on + strand at 681.961 kb on + strand at 681.988 kb on + strand at 681.999 kb on + strand at 682.062 kb on + strand, within DZA65_RS03210 at 682.062 kb on + strand, within DZA65_RS03210 at 682.080 kb on + strand, within DZA65_RS03210 at 682.080 kb on + strand, within DZA65_RS03210 at 682.335 kb on + strand at 682.339 kb on + strand at 682.380 kb on + strand at 682.487 kb on + strand at 682.488 kb on - strand at 682.488 kb on - strand at 682.488 kb on - strand at 682.488 kb on - strand at 682.488 kb on - strand at 682.490 kb on - strand at 682.493 kb on + strand at 682.493 kb on + strand at 682.493 kb on + strand at 682.493 kb on + strand at 682.493 kb on + strand at 682.493 kb on + strand at 682.493 kb on + strand at 682.493 kb on + strand at 682.493 kb on + strand at 682.493 kb on + strand at 682.493 kb on + strand at 682.494 kb on - strand at 682.494 kb on - strand at 682.494 kb on - strand at 682.621 kb on + strand at 682.656 kb on + strand at 682.656 kb on + strand at 682.707 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 681,863 - -0.7 681,886 + +0.6 681,919 + -0.5 681,919 + +1.5 681,919 + +1.5 681,919 + +0.6 681,919 + -0.2 681,961 + +1.6 681,988 + -1.8 681,999 + -0.5 682,062 + DZA65_RS03210 0.17 -0.5 682,062 + DZA65_RS03210 0.17 -0.8 682,080 + DZA65_RS03210 0.22 -1.0 682,080 + DZA65_RS03210 0.22 -1.8 682,335 + -0.3 682,339 + -0.8 682,380 + -1.5 682,487 + +1.0 682,488 - -0.7 682,488 - -0.4 682,488 - -1.1 682,488 - -2.0 682,488 - +0.9 682,490 - +0.0 682,493 + -1.3 682,493 + +1.7 682,493 + +0.6 682,493 + -0.5 682,493 + +0.0 682,493 + +0.2 682,493 + -0.4 682,493 + +1.0 682,493 + +0.0 682,493 + -1.2 682,493 + -1.0 682,494 - +1.0 682,494 - -0.5 682,494 - -0.1 682,621 + -1.3 682,656 + -1.5 682,656 + -1.2 682,707 + -1.5
Or see this region's nucleotide sequence