Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02685

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS02680 and DZA65_RS02685 are separated by 69 nucleotidesDZA65_RS02685 and DZA65_RS02690 are separated by 29 nucleotides DZA65_RS02680: DZA65_RS02680 - heavy metal translocating P-type ATPase, at 575,115 to 577,451 _RS02680 DZA65_RS02685: DZA65_RS02685 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 577,521 to 577,952 _RS02685 DZA65_RS02690: DZA65_RS02690 - LacI family DNA-binding transcriptional regulator, at 577,982 to 579,004 _RS02690 Position (kb) 577 578Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 576.636 kb on + strand, within DZA65_RS02680at 576.637 kb on - strand, within DZA65_RS02680at 577.048 kb on - strand, within DZA65_RS02680at 577.479 kb on + strandat 577.479 kb on + strandat 577.483 kb on - strandat 577.493 kb on + strandat 577.501 kb on - strandat 577.503 kb on - strandat 577.503 kb on - strandat 577.594 kb on + strand, within DZA65_RS02685at 577.614 kb on - strand, within DZA65_RS02685at 577.626 kb on + strand, within DZA65_RS02685at 577.626 kb on + strand, within DZA65_RS02685at 577.635 kb on + strand, within DZA65_RS02685at 577.635 kb on + strand, within DZA65_RS02685at 577.635 kb on + strand, within DZA65_RS02685at 577.636 kb on - strand, within DZA65_RS02685at 577.636 kb on - strand, within DZA65_RS02685at 577.636 kb on - strand, within DZA65_RS02685at 577.636 kb on - strand, within DZA65_RS02685at 577.636 kb on - strand, within DZA65_RS02685at 577.638 kb on + strand, within DZA65_RS02685at 577.638 kb on + strand, within DZA65_RS02685at 577.638 kb on + strand, within DZA65_RS02685at 577.638 kb on + strand, within DZA65_RS02685at 577.638 kb on + strand, within DZA65_RS02685at 577.638 kb on + strand, within DZA65_RS02685at 577.639 kb on - strand, within DZA65_RS02685at 577.639 kb on - strand, within DZA65_RS02685at 577.768 kb on + strand, within DZA65_RS02685at 577.768 kb on + strand, within DZA65_RS02685at 577.769 kb on - strand, within DZA65_RS02685at 577.813 kb on + strand, within DZA65_RS02685at 577.813 kb on + strand, within DZA65_RS02685at 577.814 kb on - strand, within DZA65_RS02685at 577.814 kb on - strand, within DZA65_RS02685at 577.814 kb on - strand, within DZA65_RS02685at 577.814 kb on - strand, within DZA65_RS02685at 577.814 kb on - strand, within DZA65_RS02685at 577.956 kb on + strandat 577.957 kb on - strandat 578.002 kb on + strandat 578.066 kb on + strandat 578.067 kb on - strandat 578.067 kb on - strandat 578.113 kb on + strand, within DZA65_RS02690at 578.114 kb on - strand, within DZA65_RS02690at 578.114 kb on - strand, within DZA65_RS02690at 578.114 kb on - strandat 578.114 kb on - strand, within DZA65_RS02690at 578.215 kb on + strand, within DZA65_RS02690at 578.453 kb on - strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.454 kb on + strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.455 kb on - strand, within DZA65_RS02690at 578.503 kb on + strand, within DZA65_RS02690at 578.667 kb on + strand, within DZA65_RS02690at 578.735 kb on - strand, within DZA65_RS02690at 578.785 kb on + strand, within DZA65_RS02690at 578.786 kb on - strand, within DZA65_RS02690at 578.786 kb on - strand, within DZA65_RS02690at 578.827 kb on + strand, within DZA65_RS02690at 578.827 kb on + strand, within DZA65_RS02690at 578.827 kb on + strand, within DZA65_RS02690at 578.827 kb on + strand, within DZA65_RS02690at 578.827 kb on + strand, within DZA65_RS02690at 578.828 kb on - strand, within DZA65_RS02690at 578.828 kb on - strand, within DZA65_RS02690at 578.829 kb on + strand, within DZA65_RS02690at 578.830 kb on - strand, within DZA65_RS02690

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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576,636 + DZA65_RS02680 0.65 +0.1
576,637 - DZA65_RS02680 0.65 +0.9
577,048 - DZA65_RS02680 0.83 -0.2
577,479 + -0.0
577,479 + +1.7
577,483 - -0.7
577,493 + -0.4
577,501 - -0.1
577,503 - -0.1
577,503 - +0.3
577,594 + DZA65_RS02685 0.17 -2.1
577,614 - DZA65_RS02685 0.22 -0.5
577,626 + DZA65_RS02685 0.24 -0.4
577,626 + DZA65_RS02685 0.24 +0.1
577,635 + DZA65_RS02685 0.26 -1.2
577,635 + DZA65_RS02685 0.26 -0.2
577,635 + DZA65_RS02685 0.26 -3.7
577,636 - DZA65_RS02685 0.27 -0.5
577,636 - DZA65_RS02685 0.27 -1.4
577,636 - DZA65_RS02685 0.27 +0.1
577,636 - DZA65_RS02685 0.27 -0.4
577,636 - DZA65_RS02685 0.27 -2.1
577,638 + DZA65_RS02685 0.27 -1.3
577,638 + DZA65_RS02685 0.27 -0.2
577,638 + DZA65_RS02685 0.27 -0.2
577,638 + DZA65_RS02685 0.27 -1.6
577,638 + DZA65_RS02685 0.27 -1.5
577,638 + DZA65_RS02685 0.27 +0.7
577,639 - DZA65_RS02685 0.27 -1.3
577,639 - DZA65_RS02685 0.27 -0.3
577,768 + DZA65_RS02685 0.57 -2.2
577,768 + DZA65_RS02685 0.57 -1.4
577,769 - DZA65_RS02685 0.57 +1.1
577,813 + DZA65_RS02685 0.68 +0.4
577,813 + DZA65_RS02685 0.68 +0.1
577,814 - DZA65_RS02685 0.68 -1.2
577,814 - DZA65_RS02685 0.68 -0.3
577,814 - DZA65_RS02685 0.68 -0.7
577,814 - DZA65_RS02685 0.68 +1.9
577,814 - DZA65_RS02685 0.68 +1.1
577,956 + +0.1
577,957 - +0.1
578,002 + +0.8
578,066 + +0.7
578,067 - -0.7
578,067 - -0.5
578,113 + DZA65_RS02690 0.13 +0.6
578,114 - DZA65_RS02690 0.13 +0.5
578,114 - DZA65_RS02690 0.13 -1.2
578,114 - -0.5
578,114 - DZA65_RS02690 0.13 +0.1
578,215 + DZA65_RS02690 0.23 -1.0
578,453 - DZA65_RS02690 0.46 -0.4
578,454 + DZA65_RS02690 0.46 +1.7
578,454 + DZA65_RS02690 0.46 -1.8
578,454 + DZA65_RS02690 0.46 +1.7
578,454 + DZA65_RS02690 0.46 -0.5
578,454 + DZA65_RS02690 0.46 -0.6
578,454 + DZA65_RS02690 0.46 -0.6
578,454 + DZA65_RS02690 0.46 -0.5
578,454 + DZA65_RS02690 0.46 -0.4
578,454 + DZA65_RS02690 0.46 -0.2
578,454 + DZA65_RS02690 0.46 -1.0
578,454 + DZA65_RS02690 0.46 +0.2
578,454 + DZA65_RS02690 0.46 -1.5
578,454 + DZA65_RS02690 0.46 -1.7
578,454 + DZA65_RS02690 0.46 -0.2
578,455 - DZA65_RS02690 0.46 -1.2
578,455 - DZA65_RS02690 0.46 +0.3
578,455 - DZA65_RS02690 0.46 -1.1
578,455 - DZA65_RS02690 0.46 +0.1
578,455 - DZA65_RS02690 0.46 +0.2
578,455 - DZA65_RS02690 0.46 -0.5
578,455 - DZA65_RS02690 0.46 -0.8
578,455 - DZA65_RS02690 0.46 -1.5
578,455 - DZA65_RS02690 0.46 -0.2
578,455 - DZA65_RS02690 0.46 +0.1
578,455 - DZA65_RS02690 0.46 -0.9
578,455 - DZA65_RS02690 0.46 -1.1
578,503 + DZA65_RS02690 0.51 +0.1
578,667 + DZA65_RS02690 0.67 +0.1
578,735 - DZA65_RS02690 0.74 -0.2
578,785 + DZA65_RS02690 0.78 +2.1
578,786 - DZA65_RS02690 0.79 -1.5
578,786 - DZA65_RS02690 0.79 -0.9
578,827 + DZA65_RS02690 0.83 -0.2
578,827 + DZA65_RS02690 0.83 +0.8
578,827 + DZA65_RS02690 0.83 -0.8
578,827 + DZA65_RS02690 0.83 -1.2
578,827 + DZA65_RS02690 0.83 -0.6
578,828 - DZA65_RS02690 0.83 +1.2
578,828 - DZA65_RS02690 0.83 +0.3
578,829 + DZA65_RS02690 0.83 -0.9
578,830 - DZA65_RS02690 0.83 -1.2

Or see this region's nucleotide sequence