Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02335

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS02330 and DZA65_RS02335 overlap by 4 nucleotidesDZA65_RS02335 and DZA65_RS02340 are separated by 35 nucleotides DZA65_RS02330: DZA65_RS02330 - ABC transporter ATP-binding protein, at 503,404 to 504,381 _RS02330 DZA65_RS02335: DZA65_RS02335 - ABC transporter ATP-binding protein, at 504,378 to 505,241 _RS02335 DZA65_RS02340: DZA65_RS02340 - M20 family metallopeptidase, at 505,277 to 506,695 _RS02340 Position (kb) 504 505 506Strain fitness (log2 ratio) -2 -1 0 1 2at 503.599 kb on - strand, within DZA65_RS02330at 503.798 kb on - strand, within DZA65_RS02330at 503.798 kb on - strand, within DZA65_RS02330at 503.886 kb on + strand, within DZA65_RS02330at 503.886 kb on + strand, within DZA65_RS02330at 503.886 kb on + strand, within DZA65_RS02330at 503.886 kb on + strand, within DZA65_RS02330at 503.886 kb on + strand, within DZA65_RS02330at 503.886 kb on + strand, within DZA65_RS02330at 503.887 kb on - strand, within DZA65_RS02330at 504.082 kb on + strand, within DZA65_RS02330at 504.082 kb on + strand, within DZA65_RS02330at 504.083 kb on - strand, within DZA65_RS02330at 504.083 kb on - strand, within DZA65_RS02330at 504.083 kb on - strand, within DZA65_RS02330at 504.083 kb on - strand, within DZA65_RS02330at 504.083 kb on - strand, within DZA65_RS02330at 504.083 kb on - strand, within DZA65_RS02330at 504.083 kb on - strand, within DZA65_RS02330at 504.083 kb on - strand, within DZA65_RS02330at 504.083 kb on - strand, within DZA65_RS02330at 504.083 kb on - strand, within DZA65_RS02330at 504.083 kb on - strand, within DZA65_RS02330at 504.083 kb on - strand, within DZA65_RS02330at 504.145 kb on + strand, within DZA65_RS02330at 504.145 kb on + strand, within DZA65_RS02330at 504.148 kb on - strand, within DZA65_RS02330at 504.168 kb on + strand, within DZA65_RS02330at 504.168 kb on + strand, within DZA65_RS02330at 504.169 kb on - strand, within DZA65_RS02330at 504.169 kb on - strand, within DZA65_RS02330at 504.169 kb on - strand, within DZA65_RS02330at 504.264 kb on + strand, within DZA65_RS02330at 504.264 kb on + strand, within DZA65_RS02330at 504.314 kb on - strandat 504.314 kb on - strandat 504.314 kb on - strandat 504.314 kb on - strandat 504.314 kb on - strandat 504.420 kb on - strandat 504.420 kb on - strandat 504.437 kb on + strandat 504.437 kb on + strandat 504.437 kb on + strandat 504.438 kb on - strandat 504.524 kb on + strand, within DZA65_RS02335at 504.525 kb on - strand, within DZA65_RS02335at 504.529 kb on + strand, within DZA65_RS02335at 504.529 kb on + strand, within DZA65_RS02335at 504.529 kb on + strand, within DZA65_RS02335at 504.530 kb on - strand, within DZA65_RS02335at 504.530 kb on - strand, within DZA65_RS02335at 504.530 kb on - strand, within DZA65_RS02335at 504.530 kb on - strand, within DZA65_RS02335at 504.530 kb on - strand, within DZA65_RS02335at 504.539 kb on + strand, within DZA65_RS02335at 504.724 kb on - strand, within DZA65_RS02335at 504.809 kb on + strand, within DZA65_RS02335at 504.809 kb on + strand, within DZA65_RS02335at 504.809 kb on + strand, within DZA65_RS02335at 504.809 kb on + strand, within DZA65_RS02335at 504.809 kb on + strand, within DZA65_RS02335at 504.809 kb on + strand, within DZA65_RS02335at 504.810 kb on - strand, within DZA65_RS02335at 504.986 kb on - strand, within DZA65_RS02335at 505.041 kb on + strand, within DZA65_RS02335at 505.041 kb on + strand, within DZA65_RS02335at 505.042 kb on - strand, within DZA65_RS02335at 505.042 kb on - strand, within DZA65_RS02335at 505.042 kb on - strand, within DZA65_RS02335at 505.058 kb on + strand, within DZA65_RS02335at 505.077 kb on + strand, within DZA65_RS02335at 505.077 kb on + strand, within DZA65_RS02335at 505.078 kb on - strand, within DZA65_RS02335at 505.078 kb on - strand, within DZA65_RS02335at 505.145 kb on - strand, within DZA65_RS02335at 505.145 kb on - strand, within DZA65_RS02335at 505.167 kb on + strandat 505.167 kb on + strandat 505.167 kb on + strandat 505.168 kb on - strandat 505.168 kb on - strandat 505.168 kb on - strandat 505.168 kb on - strandat 505.239 kb on + strandat 505.240 kb on - strandat 505.313 kb on + strandat 505.409 kb on + strandat 505.516 kb on - strand, within DZA65_RS02340at 505.516 kb on - strand, within DZA65_RS02340at 505.547 kb on + strand, within DZA65_RS02340at 505.547 kb on + strand, within DZA65_RS02340at 505.547 kb on + strand, within DZA65_RS02340at 505.548 kb on - strand, within DZA65_RS02340at 505.548 kb on - strand, within DZA65_RS02340at 505.548 kb on - strandat 505.563 kb on + strand, within DZA65_RS02340at 505.563 kb on + strand, within DZA65_RS02340at 505.563 kb on + strand, within DZA65_RS02340at 505.563 kb on + strand, within DZA65_RS02340at 505.563 kb on + strand, within DZA65_RS02340at 505.563 kb on + strand, within DZA65_RS02340at 505.564 kb on - strand, within DZA65_RS02340at 505.564 kb on - strand, within DZA65_RS02340at 505.564 kb on - strand, within DZA65_RS02340at 505.564 kb on - strand, within DZA65_RS02340at 505.564 kb on - strand, within DZA65_RS02340at 505.564 kb on - strand, within DZA65_RS02340at 505.564 kb on - strand, within DZA65_RS02340at 505.564 kb on - strand, within DZA65_RS02340at 505.564 kb on - strand, within DZA65_RS02340at 505.564 kb on - strand, within DZA65_RS02340at 505.638 kb on - strand, within DZA65_RS02340at 505.638 kb on - strand, within DZA65_RS02340at 505.660 kb on + strand, within DZA65_RS02340at 505.660 kb on + strand, within DZA65_RS02340at 505.661 kb on - strand, within DZA65_RS02340at 505.661 kb on - strand, within DZA65_RS02340at 505.661 kb on - strand, within DZA65_RS02340at 505.661 kb on - strand, within DZA65_RS02340at 505.661 kb on - strand, within DZA65_RS02340at 505.675 kb on + strand, within DZA65_RS02340at 505.675 kb on + strand, within DZA65_RS02340at 505.676 kb on - strand, within DZA65_RS02340at 505.731 kb on - strand, within DZA65_RS02340at 505.731 kb on - strand, within DZA65_RS02340at 505.792 kb on - strand, within DZA65_RS02340at 505.802 kb on + strand, within DZA65_RS02340at 505.875 kb on + strand, within DZA65_RS02340at 505.875 kb on + strand, within DZA65_RS02340at 505.876 kb on - strand, within DZA65_RS02340at 505.896 kb on + strand, within DZA65_RS02340at 505.896 kb on + strand, within DZA65_RS02340at 506.171 kb on + strand, within DZA65_RS02340at 506.171 kb on + strand, within DZA65_RS02340at 506.171 kb on + strand, within DZA65_RS02340at 506.171 kb on + strand, within DZA65_RS02340at 506.171 kb on + strand, within DZA65_RS02340at 506.171 kb on + strand, within DZA65_RS02340at 506.171 kb on + strand, within DZA65_RS02340at 506.171 kb on + strand, within DZA65_RS02340at 506.171 kb on + strand, within DZA65_RS02340at 506.171 kb on + strand, within DZA65_RS02340at 506.172 kb on - strand, within DZA65_RS02340at 506.172 kb on - strand, within DZA65_RS02340at 506.172 kb on - strand, within DZA65_RS02340at 506.172 kb on - strand, within DZA65_RS02340at 506.172 kb on - strand, within DZA65_RS02340at 506.172 kb on - strand, within DZA65_RS02340at 506.172 kb on - strand, within DZA65_RS02340

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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503,599 - DZA65_RS02330 0.20 -0.5
503,798 - DZA65_RS02330 0.40 +2.4
503,798 - DZA65_RS02330 0.40 -1.5
503,886 + DZA65_RS02330 0.49 -1.5
503,886 + DZA65_RS02330 0.49 -0.5
503,886 + DZA65_RS02330 0.49 +0.5
503,886 + DZA65_RS02330 0.49 -0.7
503,886 + DZA65_RS02330 0.49 +0.3
503,886 + DZA65_RS02330 0.49 -0.5
503,887 - DZA65_RS02330 0.49 -0.7
504,082 + DZA65_RS02330 0.69 -0.2
504,082 + DZA65_RS02330 0.69 +1.7
504,083 - DZA65_RS02330 0.69 +0.1
504,083 - DZA65_RS02330 0.69 -0.9
504,083 - DZA65_RS02330 0.69 -0.9
504,083 - DZA65_RS02330 0.69 +0.4
504,083 - DZA65_RS02330 0.69 -1.0
504,083 - DZA65_RS02330 0.69 -0.5
504,083 - DZA65_RS02330 0.69 +0.1
504,083 - DZA65_RS02330 0.69 +0.7
504,083 - DZA65_RS02330 0.69 -1.1
504,083 - DZA65_RS02330 0.69 -0.8
504,083 - DZA65_RS02330 0.69 +0.8
504,083 - DZA65_RS02330 0.69 -1.2
504,145 + DZA65_RS02330 0.76 +0.7
504,145 + DZA65_RS02330 0.76 -0.9
504,148 - DZA65_RS02330 0.76 -0.1
504,168 + DZA65_RS02330 0.78 +0.8
504,168 + DZA65_RS02330 0.78 -0.7
504,169 - DZA65_RS02330 0.78 -0.5
504,169 - DZA65_RS02330 0.78 -2.2
504,169 - DZA65_RS02330 0.78 -1.9
504,264 + DZA65_RS02330 0.88 -0.6
504,264 + DZA65_RS02330 0.88 -0.8
504,314 - +1.1
504,314 - +0.6
504,314 - -0.5
504,314 - -0.0
504,314 - -1.2
504,420 - +1.1
504,420 - +2.1
504,437 + -0.1
504,437 + -1.9
504,437 + -0.5
504,438 - +1.5
504,524 + DZA65_RS02335 0.17 +0.3
504,525 - DZA65_RS02335 0.17 -0.8
504,529 + DZA65_RS02335 0.17 -0.2
504,529 + DZA65_RS02335 0.17 -0.2
504,529 + DZA65_RS02335 0.17 +0.7
504,530 - DZA65_RS02335 0.18 -0.9
504,530 - DZA65_RS02335 0.18 -0.9
504,530 - DZA65_RS02335 0.18 -0.9
504,530 - DZA65_RS02335 0.18 -0.4
504,530 - DZA65_RS02335 0.18 -2.4
504,539 + DZA65_RS02335 0.19 -0.2
504,724 - DZA65_RS02335 0.40 -0.1
504,809 + DZA65_RS02335 0.50 -1.7
504,809 + DZA65_RS02335 0.50 -0.7
504,809 + DZA65_RS02335 0.50 -0.9
504,809 + DZA65_RS02335 0.50 +0.2
504,809 + DZA65_RS02335 0.50 -0.3
504,809 + DZA65_RS02335 0.50 -0.7
504,810 - DZA65_RS02335 0.50 +0.1
504,986 - DZA65_RS02335 0.70 -0.9
505,041 + DZA65_RS02335 0.77 -0.7
505,041 + DZA65_RS02335 0.77 -0.9
505,042 - DZA65_RS02335 0.77 +0.8
505,042 - DZA65_RS02335 0.77 -1.1
505,042 - DZA65_RS02335 0.77 -0.6
505,058 + DZA65_RS02335 0.79 -2.2
505,077 + DZA65_RS02335 0.81 +0.5
505,077 + DZA65_RS02335 0.81 +0.7
505,078 - DZA65_RS02335 0.81 -0.8
505,078 - DZA65_RS02335 0.81 -2.4
505,145 - DZA65_RS02335 0.89 -1.3
505,145 - DZA65_RS02335 0.89 +0.4
505,167 + -1.1
505,167 + -1.1
505,167 + +0.1
505,168 - +0.3
505,168 - +1.4
505,168 - -1.7
505,168 - -0.8
505,239 + -1.9
505,240 - +1.5
505,313 + -0.3
505,409 + -0.7
505,516 - DZA65_RS02340 0.17 -0.1
505,516 - DZA65_RS02340 0.17 -1.9
505,547 + DZA65_RS02340 0.19 +0.8
505,547 + DZA65_RS02340 0.19 -0.2
505,547 + DZA65_RS02340 0.19 +1.5
505,548 - DZA65_RS02340 0.19 +0.4
505,548 - DZA65_RS02340 0.19 -0.2
505,548 - -0.9
505,563 + DZA65_RS02340 0.20 +0.0
505,563 + DZA65_RS02340 0.20 -1.1
505,563 + DZA65_RS02340 0.20 -0.7
505,563 + DZA65_RS02340 0.20 +0.7
505,563 + DZA65_RS02340 0.20 -0.2
505,563 + DZA65_RS02340 0.20 -1.1
505,564 - DZA65_RS02340 0.20 -0.5
505,564 - DZA65_RS02340 0.20 -1.4
505,564 - DZA65_RS02340 0.20 +0.2
505,564 - DZA65_RS02340 0.20 -1.9
505,564 - DZA65_RS02340 0.20 -0.5
505,564 - DZA65_RS02340 0.20 -0.4
505,564 - DZA65_RS02340 0.20 -0.8
505,564 - DZA65_RS02340 0.20 -0.4
505,564 - DZA65_RS02340 0.20 -0.0
505,564 - DZA65_RS02340 0.20 -0.6
505,638 - DZA65_RS02340 0.25 -0.8
505,638 - DZA65_RS02340 0.25 -2.1
505,660 + DZA65_RS02340 0.27 +0.3
505,660 + DZA65_RS02340 0.27 -0.8
505,661 - DZA65_RS02340 0.27 -1.2
505,661 - DZA65_RS02340 0.27 -1.7
505,661 - DZA65_RS02340 0.27 -0.8
505,661 - DZA65_RS02340 0.27 -1.2
505,661 - DZA65_RS02340 0.27 -1.3
505,675 + DZA65_RS02340 0.28 -1.0
505,675 + DZA65_RS02340 0.28 -0.2
505,676 - DZA65_RS02340 0.28 -0.1
505,731 - DZA65_RS02340 0.32 -0.8
505,731 - DZA65_RS02340 0.32 -0.3
505,792 - DZA65_RS02340 0.36 -1.1
505,802 + DZA65_RS02340 0.37 +1.1
505,875 + DZA65_RS02340 0.42 -0.1
505,875 + DZA65_RS02340 0.42 +1.1
505,876 - DZA65_RS02340 0.42 +1.5
505,896 + DZA65_RS02340 0.44 +0.1
505,896 + DZA65_RS02340 0.44 -1.1
506,171 + DZA65_RS02340 0.63 +0.2
506,171 + DZA65_RS02340 0.63 +0.5
506,171 + DZA65_RS02340 0.63 -0.5
506,171 + DZA65_RS02340 0.63 -0.9
506,171 + DZA65_RS02340 0.63 +2.1
506,171 + DZA65_RS02340 0.63 +0.1
506,171 + DZA65_RS02340 0.63 -1.9
506,171 + DZA65_RS02340 0.63 -1.2
506,171 + DZA65_RS02340 0.63 -1.7
506,171 + DZA65_RS02340 0.63 -1.1
506,172 - DZA65_RS02340 0.63 -0.2
506,172 - DZA65_RS02340 0.63 +0.7
506,172 - DZA65_RS02340 0.63 +0.4
506,172 - DZA65_RS02340 0.63 -0.4
506,172 - DZA65_RS02340 0.63 -0.1
506,172 - DZA65_RS02340 0.63 +0.4
506,172 - DZA65_RS02340 0.63 +0.1

Or see this region's nucleotide sequence