Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02040 and DZA65_RS02045 are separated by 52 nucleotides DZA65_RS02045 and DZA65_RS02050 are separated by 715 nucleotides
DZA65_RS02040: DZA65_RS02040 - carbamate kinase, at 447,951 to 448,880
_RS02040
DZA65_RS02045: DZA65_RS02045 - arginine deiminase, at 448,933 to 450,153
_RS02045
DZA65_RS02050: DZA65_RS02050 - valine--tRNA ligase, at 450,869 to 453,739
_RS02050
Position (kb) 448
449
450
451 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 447.948 kb on + strand at 447.948 kb on + strand at 447.948 kb on + strand at 447.949 kb on - strand at 447.949 kb on - strand at 447.952 kb on + strand at 447.952 kb on + strand at 447.952 kb on + strand at 447.953 kb on - strand at 447.953 kb on - strand at 447.953 kb on - strand at 447.971 kb on + strand at 448.043 kb on + strand at 448.131 kb on + strand, within DZA65_RS02040 at 448.132 kb on - strand, within DZA65_RS02040 at 448.165 kb on + strand, within DZA65_RS02040 at 448.165 kb on + strand, within DZA65_RS02040 at 448.165 kb on + strand, within DZA65_RS02040 at 448.166 kb on - strand, within DZA65_RS02040 at 448.190 kb on + strand, within DZA65_RS02040 at 448.190 kb on + strand, within DZA65_RS02040 at 448.190 kb on + strand, within DZA65_RS02040 at 448.191 kb on - strand, within DZA65_RS02040 at 448.191 kb on - strand, within DZA65_RS02040 at 448.191 kb on - strand, within DZA65_RS02040 at 448.191 kb on - strand, within DZA65_RS02040 at 448.209 kb on + strand, within DZA65_RS02040 at 448.209 kb on + strand, within DZA65_RS02040 at 448.209 kb on + strand, within DZA65_RS02040 at 448.210 kb on - strand, within DZA65_RS02040 at 448.245 kb on - strand, within DZA65_RS02040 at 448.245 kb on - strand, within DZA65_RS02040 at 448.371 kb on + strand, within DZA65_RS02040 at 448.372 kb on - strand, within DZA65_RS02040 at 448.372 kb on - strand, within DZA65_RS02040 at 448.465 kb on + strand, within DZA65_RS02040 at 448.466 kb on - strand, within DZA65_RS02040 at 448.478 kb on - strand, within DZA65_RS02040 at 448.490 kb on + strand, within DZA65_RS02040 at 448.492 kb on + strand, within DZA65_RS02040 at 448.492 kb on + strand, within DZA65_RS02040 at 448.492 kb on + strand, within DZA65_RS02040 at 448.492 kb on + strand, within DZA65_RS02040 at 448.492 kb on + strand, within DZA65_RS02040 at 448.492 kb on + strand, within DZA65_RS02040 at 448.493 kb on - strand, within DZA65_RS02040 at 448.493 kb on - strand, within DZA65_RS02040 at 448.493 kb on - strand, within DZA65_RS02040 at 448.493 kb on - strand, within DZA65_RS02040 at 448.553 kb on + strand, within DZA65_RS02040 at 448.554 kb on - strand, within DZA65_RS02040 at 448.554 kb on - strand, within DZA65_RS02040 at 448.637 kb on + strand, within DZA65_RS02040 at 448.638 kb on - strand, within DZA65_RS02040 at 448.681 kb on - strand, within DZA65_RS02040 at 448.722 kb on + strand, within DZA65_RS02040 at 448.722 kb on + strand, within DZA65_RS02040 at 448.723 kb on - strand, within DZA65_RS02040 at 448.723 kb on - strand, within DZA65_RS02040 at 448.773 kb on - strand, within DZA65_RS02040 at 448.775 kb on + strand, within DZA65_RS02040 at 448.775 kb on + strand at 448.775 kb on + strand, within DZA65_RS02040 at 448.776 kb on - strand, within DZA65_RS02040 at 448.776 kb on - strand, within DZA65_RS02040 at 448.776 kb on - strand, within DZA65_RS02040 at 448.776 kb on - strand, within DZA65_RS02040 at 448.776 kb on - strand, within DZA65_RS02040 at 448.776 kb on - strand, within DZA65_RS02040 at 448.776 kb on - strand, within DZA65_RS02040 at 448.776 kb on - strand, within DZA65_RS02040 at 448.776 kb on - strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.779 kb on - strand, within DZA65_RS02040 at 448.779 kb on - strand, within DZA65_RS02040 at 448.779 kb on - strand, within DZA65_RS02040 at 448.779 kb on - strand, within DZA65_RS02040 at 448.779 kb on - strand, within DZA65_RS02040 at 448.779 kb on - strand, within DZA65_RS02040 at 448.779 kb on - strand, within DZA65_RS02040 at 448.893 kb on + strand at 448.910 kb on + strand at 448.910 kb on + strand at 448.910 kb on + strand at 448.910 kb on + strand at 448.911 kb on - strand at 448.938 kb on + strand at 448.938 kb on + strand at 448.938 kb on + strand at 449.022 kb on + strand at 449.022 kb on + strand at 449.023 kb on - strand at 449.023 kb on - strand at 449.023 kb on - strand at 449.039 kb on + strand at 449.059 kb on - strand, within DZA65_RS02045 at 449.059 kb on - strand, within DZA65_RS02045 at 449.181 kb on + strand, within DZA65_RS02045 at 449.233 kb on + strand, within DZA65_RS02045 at 449.233 kb on + strand, within DZA65_RS02045 at 449.234 kb on - strand, within DZA65_RS02045 at 449.310 kb on + strand at 449.311 kb on - strand, within DZA65_RS02045 at 449.311 kb on - strand, within DZA65_RS02045 at 449.311 kb on - strand, within DZA65_RS02045 at 449.322 kb on + strand, within DZA65_RS02045 at 449.322 kb on + strand, within DZA65_RS02045 at 449.323 kb on - strand, within DZA65_RS02045 at 449.323 kb on - strand, within DZA65_RS02045 at 449.349 kb on + strand, within DZA65_RS02045 at 449.349 kb on + strand, within DZA65_RS02045 at 449.349 kb on + strand, within DZA65_RS02045 at 449.349 kb on + strand, within DZA65_RS02045 at 449.350 kb on - strand, within DZA65_RS02045 at 449.410 kb on + strand, within DZA65_RS02045 at 449.410 kb on + strand, within DZA65_RS02045 at 449.410 kb on + strand, within DZA65_RS02045 at 449.410 kb on + strand, within DZA65_RS02045 at 449.411 kb on - strand, within DZA65_RS02045 at 449.411 kb on - strand, within DZA65_RS02045 at 449.494 kb on + strand, within DZA65_RS02045 at 449.494 kb on + strand, within DZA65_RS02045 at 449.495 kb on - strand, within DZA65_RS02045 at 449.495 kb on - strand, within DZA65_RS02045 at 449.495 kb on - strand, within DZA65_RS02045 at 449.495 kb on - strand, within DZA65_RS02045 at 449.509 kb on + strand at 449.509 kb on + strand, within DZA65_RS02045 at 449.510 kb on - strand, within DZA65_RS02045 at 449.525 kb on + strand, within DZA65_RS02045 at 449.529 kb on + strand, within DZA65_RS02045 at 449.530 kb on - strand, within DZA65_RS02045 at 449.530 kb on - strand, within DZA65_RS02045 at 449.549 kb on + strand, within DZA65_RS02045 at 449.549 kb on + strand, within DZA65_RS02045 at 449.550 kb on - strand, within DZA65_RS02045 at 449.556 kb on + strand, within DZA65_RS02045 at 449.591 kb on + strand, within DZA65_RS02045 at 449.592 kb on - strand, within DZA65_RS02045 at 449.661 kb on + strand, within DZA65_RS02045 at 449.661 kb on + strand, within DZA65_RS02045 at 449.664 kb on - strand, within DZA65_RS02045 at 449.664 kb on - strand, within DZA65_RS02045 at 449.664 kb on - strand, within DZA65_RS02045 at 449.751 kb on + strand, within DZA65_RS02045 at 449.751 kb on + strand, within DZA65_RS02045 at 449.751 kb on + strand, within DZA65_RS02045 at 449.752 kb on - strand, within DZA65_RS02045 at 449.754 kb on + strand, within DZA65_RS02045 at 449.754 kb on + strand, within DZA65_RS02045 at 449.780 kb on + strand, within DZA65_RS02045 at 449.781 kb on - strand, within DZA65_RS02045 at 449.810 kb on - strand, within DZA65_RS02045 at 449.897 kb on - strand, within DZA65_RS02045 at 449.897 kb on - strand, within DZA65_RS02045 at 449.953 kb on + strand, within DZA65_RS02045 at 449.984 kb on - strand, within DZA65_RS02045 at 450.029 kb on - strand, within DZA65_RS02045 at 450.031 kb on + strand, within DZA65_RS02045 at 450.031 kb on + strand, within DZA65_RS02045 at 450.111 kb on + strand at 450.140 kb on + strand at 450.217 kb on + strand at 450.251 kb on - strand at 450.251 kb on - strand at 450.251 kb on - strand at 450.261 kb on - strand at 450.554 kb on + strand at 450.641 kb on - strand at 450.645 kb on - strand at 450.647 kb on + strand at 450.721 kb on + strand at 450.722 kb on - strand at 450.722 kb on - strand at 450.722 kb on - strand at 450.778 kb on + strand at 450.828 kb on + strand at 450.870 kb on + strand at 450.870 kb on + strand at 450.870 kb on + strand at 450.870 kb on + strand at 450.870 kb on + strand at 450.871 kb on - strand at 450.871 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 447,948 + +1.1 447,948 + +0.4 447,948 + -0.7 447,949 - -0.8 447,949 - +1.4 447,952 + -0.2 447,952 + +0.5 447,952 + +0.3 447,953 - -0.3 447,953 - +0.7 447,953 - -0.2 447,971 + -0.2 448,043 + -1.2 448,131 + DZA65_RS02040 0.19 -0.1 448,132 - DZA65_RS02040 0.19 -0.3 448,165 + DZA65_RS02040 0.23 -0.5 448,165 + DZA65_RS02040 0.23 -0.1 448,165 + DZA65_RS02040 0.23 +2.4 448,166 - DZA65_RS02040 0.23 -0.3 448,190 + DZA65_RS02040 0.26 -1.3 448,190 + DZA65_RS02040 0.26 -0.9 448,190 + DZA65_RS02040 0.26 +0.1 448,191 - DZA65_RS02040 0.26 -0.5 448,191 - DZA65_RS02040 0.26 -1.0 448,191 - DZA65_RS02040 0.26 -0.9 448,191 - DZA65_RS02040 0.26 -2.1 448,209 + DZA65_RS02040 0.28 -0.6 448,209 + DZA65_RS02040 0.28 +0.1 448,209 + DZA65_RS02040 0.28 -1.3 448,210 - DZA65_RS02040 0.28 -1.5 448,245 - DZA65_RS02040 0.32 -0.8 448,245 - DZA65_RS02040 0.32 +0.1 448,371 + DZA65_RS02040 0.45 -0.7 448,372 - DZA65_RS02040 0.45 +0.3 448,372 - DZA65_RS02040 0.45 +0.6 448,465 + DZA65_RS02040 0.55 -0.3 448,466 - DZA65_RS02040 0.55 +0.3 448,478 - DZA65_RS02040 0.57 -0.5 448,490 + DZA65_RS02040 0.58 -0.4 448,492 + DZA65_RS02040 0.58 +2.7 448,492 + DZA65_RS02040 0.58 -1.3 448,492 + DZA65_RS02040 0.58 -0.5 448,492 + DZA65_RS02040 0.58 +0.1 448,492 + DZA65_RS02040 0.58 -1.7 448,492 + DZA65_RS02040 0.58 -1.2 448,493 - DZA65_RS02040 0.58 +2.1 448,493 - DZA65_RS02040 0.58 -0.6 448,493 - DZA65_RS02040 0.58 -0.1 448,493 - DZA65_RS02040 0.58 -1.5 448,553 + DZA65_RS02040 0.65 -0.7 448,554 - DZA65_RS02040 0.65 -0.8 448,554 - DZA65_RS02040 0.65 -0.5 448,637 + DZA65_RS02040 0.74 +0.5 448,638 - DZA65_RS02040 0.74 -0.1 448,681 - DZA65_RS02040 0.78 -0.8 448,722 + DZA65_RS02040 0.83 -0.7 448,722 + DZA65_RS02040 0.83 -0.5 448,723 - DZA65_RS02040 0.83 -0.9 448,723 - DZA65_RS02040 0.83 +2.1 448,773 - DZA65_RS02040 0.88 +1.1 448,775 + DZA65_RS02040 0.89 +0.5 448,775 + +1.1 448,775 + DZA65_RS02040 0.89 -0.2 448,776 - DZA65_RS02040 0.89 +1.1 448,776 - DZA65_RS02040 0.89 -0.5 448,776 - DZA65_RS02040 0.89 +1.4 448,776 - DZA65_RS02040 0.89 -0.9 448,776 - DZA65_RS02040 0.89 -1.7 448,776 - DZA65_RS02040 0.89 -1.1 448,776 - DZA65_RS02040 0.89 +0.4 448,776 - DZA65_RS02040 0.89 -2.1 448,776 - DZA65_RS02040 0.89 +0.5 448,778 + DZA65_RS02040 0.89 -1.1 448,778 + DZA65_RS02040 0.89 -1.9 448,778 + DZA65_RS02040 0.89 +2.1 448,778 + DZA65_RS02040 0.89 +0.1 448,778 + DZA65_RS02040 0.89 -1.9 448,778 + DZA65_RS02040 0.89 -0.6 448,778 + DZA65_RS02040 0.89 -0.3 448,778 + DZA65_RS02040 0.89 +0.1 448,778 + DZA65_RS02040 0.89 -2.1 448,778 + DZA65_RS02040 0.89 -0.1 448,778 + DZA65_RS02040 0.89 +1.7 448,778 + DZA65_RS02040 0.89 -0.2 448,778 + DZA65_RS02040 0.89 -0.2 448,778 + DZA65_RS02040 0.89 +0.7 448,778 + DZA65_RS02040 0.89 +1.1 448,778 + DZA65_RS02040 0.89 -0.9 448,778 + DZA65_RS02040 0.89 +0.1 448,778 + DZA65_RS02040 0.89 -0.5 448,779 - DZA65_RS02040 0.89 -0.3 448,779 - DZA65_RS02040 0.89 -0.5 448,779 - DZA65_RS02040 0.89 +1.4 448,779 - DZA65_RS02040 0.89 -1.8 448,779 - DZA65_RS02040 0.89 -1.2 448,779 - DZA65_RS02040 0.89 +0.7 448,779 - DZA65_RS02040 0.89 -0.4 448,893 + +0.3 448,910 + -1.7 448,910 + +0.4 448,910 + -0.7 448,910 + -1.0 448,911 - +0.8 448,938 + -1.2 448,938 + -0.9 448,938 + -0.0 449,022 + +0.7 449,022 + -0.7 449,023 - -1.1 449,023 - -0.2 449,023 - -2.3 449,039 + +1.1 449,059 - DZA65_RS02045 0.10 -0.5 449,059 - DZA65_RS02045 0.10 -0.7 449,181 + DZA65_RS02045 0.20 -2.1 449,233 + DZA65_RS02045 0.25 +1.1 449,233 + DZA65_RS02045 0.25 -0.7 449,234 - DZA65_RS02045 0.25 -0.9 449,310 + +0.1 449,311 - DZA65_RS02045 0.31 -0.6 449,311 - DZA65_RS02045 0.31 -1.9 449,311 - DZA65_RS02045 0.31 -0.1 449,322 + DZA65_RS02045 0.32 -1.5 449,322 + DZA65_RS02045 0.32 -0.3 449,323 - DZA65_RS02045 0.32 -0.5 449,323 - DZA65_RS02045 0.32 +0.1 449,349 + DZA65_RS02045 0.34 +0.1 449,349 + DZA65_RS02045 0.34 -0.0 449,349 + DZA65_RS02045 0.34 +1.1 449,349 + DZA65_RS02045 0.34 -0.8 449,350 - DZA65_RS02045 0.34 -1.5 449,410 + DZA65_RS02045 0.39 -0.9 449,410 + DZA65_RS02045 0.39 -0.3 449,410 + DZA65_RS02045 0.39 -0.5 449,410 + DZA65_RS02045 0.39 -0.9 449,411 - DZA65_RS02045 0.39 -1.2 449,411 - DZA65_RS02045 0.39 -0.4 449,494 + DZA65_RS02045 0.46 -1.0 449,494 + DZA65_RS02045 0.46 -1.7 449,495 - DZA65_RS02045 0.46 +0.1 449,495 - DZA65_RS02045 0.46 -0.3 449,495 - DZA65_RS02045 0.46 -0.1 449,495 - DZA65_RS02045 0.46 -0.5 449,509 + -0.9 449,509 + DZA65_RS02045 0.47 +0.1 449,510 - DZA65_RS02045 0.47 -0.4 449,525 + DZA65_RS02045 0.48 -0.3 449,529 + DZA65_RS02045 0.49 -0.3 449,530 - DZA65_RS02045 0.49 +0.5 449,530 - DZA65_RS02045 0.49 -0.9 449,549 + DZA65_RS02045 0.50 -0.2 449,549 + DZA65_RS02045 0.50 -0.8 449,550 - DZA65_RS02045 0.51 -2.8 449,556 + DZA65_RS02045 0.51 +0.0 449,591 + DZA65_RS02045 0.54 -0.9 449,592 - DZA65_RS02045 0.54 -0.3 449,661 + DZA65_RS02045 0.60 -0.5 449,661 + DZA65_RS02045 0.60 -0.5 449,664 - DZA65_RS02045 0.60 -0.9 449,664 - DZA65_RS02045 0.60 -1.3 449,664 - DZA65_RS02045 0.60 -2.1 449,751 + DZA65_RS02045 0.67 -1.0 449,751 + DZA65_RS02045 0.67 -0.1 449,751 + DZA65_RS02045 0.67 -1.0 449,752 - DZA65_RS02045 0.67 -0.7 449,754 + DZA65_RS02045 0.67 -0.9 449,754 + DZA65_RS02045 0.67 -2.7 449,780 + DZA65_RS02045 0.69 -1.5 449,781 - DZA65_RS02045 0.69 -0.7 449,810 - DZA65_RS02045 0.72 -0.5 449,897 - DZA65_RS02045 0.79 -2.2 449,897 - DZA65_RS02045 0.79 -0.8 449,953 + DZA65_RS02045 0.84 -0.5 449,984 - DZA65_RS02045 0.86 -0.5 450,029 - DZA65_RS02045 0.90 -0.9 450,031 + DZA65_RS02045 0.90 +0.2 450,031 + DZA65_RS02045 0.90 -1.9 450,111 + -0.5 450,140 + -1.2 450,217 + +0.3 450,251 - +0.4 450,251 - -0.5 450,251 - -0.9 450,261 - -1.6 450,554 + -0.2 450,641 - +0.4 450,645 - +0.1 450,647 + -1.5 450,721 + -0.1 450,722 - +0.1 450,722 - -0.2 450,722 - -0.0 450,778 + -0.9 450,828 + -1.2 450,870 + +0.7 450,870 + -1.1 450,870 + -1.9 450,870 + +0.4 450,870 + -1.2 450,871 - -1.2 450,871 - -0.9
Or see this region's nucleotide sequence