Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01660 and DZA65_RS01665 are separated by 135 nucleotides DZA65_RS01665 and DZA65_RS01670 are separated by 10 nucleotides DZA65_RS01670 and DZA65_RS01675 are separated by 73 nucleotides
DZA65_RS01660: DZA65_RS01660 - alginate lyase family protein, at 361,775 to 363,076
_RS01660
DZA65_RS01665: DZA65_RS01665 - divisome-associated lipoprotein YraP, at 363,212 to 363,787
_RS01665
DZA65_RS01670: DZA65_RS01670 - DnaA initiator-associating protein DiaA, at 363,798 to 364,388
_RS01670
DZA65_RS01675: DZA65_RS01675 - YraN family protein, at 364,462 to 364,857
_RS01675
Position (kb) 363
364 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 362.217 kb on - strand, within DZA65_RS01660 at 362.217 kb on - strand, within DZA65_RS01660 at 362.237 kb on + strand, within DZA65_RS01660 at 362.238 kb on - strand, within DZA65_RS01660 at 362.238 kb on - strand, within DZA65_RS01660 at 362.238 kb on - strand, within DZA65_RS01660 at 362.238 kb on - strand, within DZA65_RS01660 at 362.251 kb on + strand, within DZA65_RS01660 at 362.251 kb on + strand, within DZA65_RS01660 at 362.251 kb on + strand, within DZA65_RS01660 at 362.251 kb on + strand, within DZA65_RS01660 at 362.251 kb on + strand, within DZA65_RS01660 at 362.251 kb on + strand, within DZA65_RS01660 at 362.252 kb on - strand, within DZA65_RS01660 at 362.275 kb on + strand, within DZA65_RS01660 at 362.294 kb on - strand, within DZA65_RS01660 at 362.294 kb on - strand, within DZA65_RS01660 at 362.303 kb on - strand, within DZA65_RS01660 at 362.312 kb on + strand at 362.312 kb on + strand, within DZA65_RS01660 at 362.313 kb on - strand, within DZA65_RS01660 at 362.313 kb on - strand, within DZA65_RS01660 at 362.386 kb on + strand, within DZA65_RS01660 at 362.386 kb on + strand, within DZA65_RS01660 at 362.471 kb on + strand, within DZA65_RS01660 at 362.497 kb on + strand, within DZA65_RS01660 at 362.527 kb on + strand, within DZA65_RS01660 at 362.527 kb on + strand, within DZA65_RS01660 at 362.527 kb on + strand, within DZA65_RS01660 at 362.544 kb on - strand, within DZA65_RS01660 at 362.544 kb on - strand, within DZA65_RS01660 at 362.545 kb on + strand, within DZA65_RS01660 at 362.545 kb on + strand, within DZA65_RS01660 at 362.545 kb on + strand, within DZA65_RS01660 at 362.545 kb on + strand, within DZA65_RS01660 at 362.545 kb on + strand, within DZA65_RS01660 at 362.546 kb on - strand, within DZA65_RS01660 at 362.546 kb on - strand, within DZA65_RS01660 at 362.546 kb on - strand, within DZA65_RS01660 at 362.546 kb on - strand, within DZA65_RS01660 at 362.546 kb on - strand, within DZA65_RS01660 at 362.546 kb on - strand, within DZA65_RS01660 at 362.546 kb on - strand, within DZA65_RS01660 at 362.574 kb on - strand, within DZA65_RS01660 at 362.693 kb on + strand, within DZA65_RS01660 at 362.736 kb on + strand, within DZA65_RS01660 at 362.748 kb on - strand, within DZA65_RS01660 at 362.768 kb on + strand, within DZA65_RS01660 at 362.773 kb on + strand, within DZA65_RS01660 at 362.774 kb on - strand, within DZA65_RS01660 at 362.822 kb on + strand, within DZA65_RS01660 at 362.850 kb on - strand, within DZA65_RS01660 at 362.851 kb on + strand, within DZA65_RS01660 at 362.851 kb on + strand, within DZA65_RS01660 at 362.851 kb on + strand, within DZA65_RS01660 at 362.851 kb on + strand, within DZA65_RS01660 at 362.851 kb on + strand, within DZA65_RS01660 at 362.851 kb on + strand, within DZA65_RS01660 at 362.852 kb on - strand, within DZA65_RS01660 at 362.852 kb on - strand, within DZA65_RS01660 at 362.857 kb on + strand, within DZA65_RS01660 at 362.858 kb on - strand, within DZA65_RS01660 at 362.858 kb on - strand, within DZA65_RS01660 at 362.858 kb on - strand, within DZA65_RS01660 at 362.956 kb on + strand at 362.957 kb on - strand at 363.078 kb on + strand at 363.079 kb on - strand at 363.083 kb on - strand at 363.094 kb on + strand at 363.095 kb on - strand at 363.099 kb on - strand at 363.110 kb on + strand at 363.197 kb on - strand at 363.197 kb on - strand at 363.213 kb on + strand at 363.214 kb on - strand at 363.214 kb on - strand at 363.214 kb on - strand at 363.549 kb on - strand, within DZA65_RS01665 at 363.778 kb on - strand at 363.778 kb on - strand at 363.778 kb on - strand at 363.778 kb on - strand at 363.778 kb on - strand at 363.778 kb on - strand at 363.799 kb on + strand at 363.800 kb on - strand at 363.800 kb on - strand at 363.827 kb on + strand at 363.828 kb on - strand at 363.834 kb on + strand at 363.834 kb on + strand at 363.834 kb on + strand at 363.834 kb on + strand at 363.834 kb on + strand at 363.834 kb on + strand at 363.835 kb on - strand at 363.863 kb on + strand, within DZA65_RS01670 at 363.863 kb on + strand, within DZA65_RS01670 at 363.864 kb on - strand, within DZA65_RS01670 at 363.864 kb on - strand, within DZA65_RS01670 at 363.864 kb on - strand, within DZA65_RS01670 at 363.864 kb on - strand, within DZA65_RS01670 at 363.864 kb on - strand, within DZA65_RS01670 at 363.864 kb on - strand, within DZA65_RS01670 at 363.955 kb on + strand, within DZA65_RS01670 at 364.093 kb on + strand, within DZA65_RS01670 at 364.142 kb on + strand, within DZA65_RS01670 at 364.151 kb on + strand, within DZA65_RS01670 at 364.151 kb on + strand, within DZA65_RS01670 at 364.151 kb on + strand, within DZA65_RS01670 at 364.152 kb on - strand, within DZA65_RS01670 at 364.152 kb on - strand, within DZA65_RS01670 at 364.172 kb on + strand, within DZA65_RS01670 at 364.172 kb on + strand, within DZA65_RS01670 at 364.202 kb on + strand, within DZA65_RS01670 at 364.203 kb on - strand, within DZA65_RS01670 at 364.203 kb on - strand, within DZA65_RS01670 at 364.203 kb on - strand, within DZA65_RS01670 at 364.373 kb on + strand at 364.373 kb on + strand at 364.374 kb on - strand at 364.374 kb on - strand at 364.374 kb on - strand at 364.407 kb on + strand at 364.408 kb on - strand at 364.439 kb on + strand at 364.439 kb on + strand at 364.439 kb on + strand at 364.439 kb on + strand at 364.440 kb on - strand at 364.440 kb on - strand at 364.451 kb on + strand at 364.452 kb on - strand at 364.452 kb on - strand at 364.464 kb on - strand at 364.620 kb on + strand, within DZA65_RS01675 at 364.620 kb on + strand, within DZA65_RS01675 at 364.651 kb on - strand, within DZA65_RS01675 at 364.698 kb on + strand, within DZA65_RS01675 at 364.699 kb on - strand, within DZA65_RS01675 at 364.699 kb on - strand, within DZA65_RS01675 at 364.723 kb on + strand, within DZA65_RS01675
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 362,217 - DZA65_RS01660 0.34 -0.9 362,217 - DZA65_RS01660 0.34 -0.0 362,237 + DZA65_RS01660 0.35 -0.2 362,238 - DZA65_RS01660 0.36 -2.3 362,238 - DZA65_RS01660 0.36 -0.2 362,238 - DZA65_RS01660 0.36 -1.6 362,238 - DZA65_RS01660 0.36 +1.1 362,251 + DZA65_RS01660 0.37 -0.2 362,251 + DZA65_RS01660 0.37 +1.1 362,251 + DZA65_RS01660 0.37 -1.3 362,251 + DZA65_RS01660 0.37 -0.7 362,251 + DZA65_RS01660 0.37 -0.6 362,251 + DZA65_RS01660 0.37 +1.9 362,252 - DZA65_RS01660 0.37 +0.8 362,275 + DZA65_RS01660 0.38 +1.1 362,294 - DZA65_RS01660 0.40 -0.1 362,294 - DZA65_RS01660 0.40 +0.5 362,303 - DZA65_RS01660 0.41 -1.4 362,312 + +0.1 362,312 + DZA65_RS01660 0.41 -0.0 362,313 - DZA65_RS01660 0.41 -0.5 362,313 - DZA65_RS01660 0.41 -1.9 362,386 + DZA65_RS01660 0.47 -1.5 362,386 + DZA65_RS01660 0.47 -0.9 362,471 + DZA65_RS01660 0.53 +0.4 362,497 + DZA65_RS01660 0.55 -0.6 362,527 + DZA65_RS01660 0.58 +1.1 362,527 + DZA65_RS01660 0.58 -0.5 362,527 + DZA65_RS01660 0.58 -0.0 362,544 - DZA65_RS01660 0.59 -1.2 362,544 - DZA65_RS01660 0.59 -1.7 362,545 + DZA65_RS01660 0.59 -1.1 362,545 + DZA65_RS01660 0.59 -0.8 362,545 + DZA65_RS01660 0.59 -1.8 362,545 + DZA65_RS01660 0.59 -0.6 362,545 + DZA65_RS01660 0.59 +0.8 362,546 - DZA65_RS01660 0.59 +0.5 362,546 - DZA65_RS01660 0.59 -1.3 362,546 - DZA65_RS01660 0.59 -0.1 362,546 - DZA65_RS01660 0.59 +0.5 362,546 - DZA65_RS01660 0.59 -1.1 362,546 - DZA65_RS01660 0.59 -0.3 362,546 - DZA65_RS01660 0.59 -0.2 362,574 - DZA65_RS01660 0.61 +0.4 362,693 + DZA65_RS01660 0.71 -0.2 362,736 + DZA65_RS01660 0.74 -0.7 362,748 - DZA65_RS01660 0.75 +0.5 362,768 + DZA65_RS01660 0.76 +0.1 362,773 + DZA65_RS01660 0.77 -0.3 362,774 - DZA65_RS01660 0.77 -0.2 362,822 + DZA65_RS01660 0.80 -1.1 362,850 - DZA65_RS01660 0.83 -1.2 362,851 + DZA65_RS01660 0.83 +0.5 362,851 + DZA65_RS01660 0.83 -0.0 362,851 + DZA65_RS01660 0.83 -0.9 362,851 + DZA65_RS01660 0.83 -0.6 362,851 + DZA65_RS01660 0.83 -1.2 362,851 + DZA65_RS01660 0.83 -2.3 362,852 - DZA65_RS01660 0.83 -0.5 362,852 - DZA65_RS01660 0.83 -2.0 362,857 + DZA65_RS01660 0.83 -0.2 362,858 - DZA65_RS01660 0.83 +0.3 362,858 - DZA65_RS01660 0.83 -1.0 362,858 - DZA65_RS01660 0.83 -0.7 362,956 + -1.1 362,957 - +0.1 363,078 + -2.8 363,079 - +1.1 363,083 - -1.2 363,094 + -1.5 363,095 - -1.2 363,099 - +0.7 363,110 + -0.2 363,197 - +0.5 363,197 - -1.3 363,213 + -2.2 363,214 - +0.4 363,214 - -0.2 363,214 - -1.0 363,549 - DZA65_RS01665 0.59 -0.2 363,778 - -0.7 363,778 - -0.7 363,778 - -1.2 363,778 - -1.0 363,778 - -1.3 363,778 - -1.5 363,799 + -0.9 363,800 - -0.2 363,800 - -1.9 363,827 + -0.5 363,828 - -0.5 363,834 + -0.5 363,834 + -1.0 363,834 + -0.8 363,834 + -0.9 363,834 + +0.1 363,834 + -0.7 363,835 - -0.3 363,863 + DZA65_RS01670 0.11 -2.1 363,863 + DZA65_RS01670 0.11 -1.0 363,864 - DZA65_RS01670 0.11 -0.3 363,864 - DZA65_RS01670 0.11 -1.7 363,864 - DZA65_RS01670 0.11 -1.3 363,864 - DZA65_RS01670 0.11 +1.3 363,864 - DZA65_RS01670 0.11 -0.6 363,864 - DZA65_RS01670 0.11 -0.5 363,955 + DZA65_RS01670 0.27 -0.3 364,093 + DZA65_RS01670 0.50 -2.5 364,142 + DZA65_RS01670 0.58 -1.3 364,151 + DZA65_RS01670 0.60 -0.1 364,151 + DZA65_RS01670 0.60 +0.7 364,151 + DZA65_RS01670 0.60 +0.9 364,152 - DZA65_RS01670 0.60 -0.5 364,152 - DZA65_RS01670 0.60 +0.1 364,172 + DZA65_RS01670 0.63 -2.2 364,172 + DZA65_RS01670 0.63 -0.6 364,202 + DZA65_RS01670 0.68 -0.1 364,203 - DZA65_RS01670 0.69 +0.1 364,203 - DZA65_RS01670 0.69 -0.5 364,203 - DZA65_RS01670 0.69 -0.7 364,373 + -0.5 364,373 + +0.6 364,374 - +2.4 364,374 - +0.1 364,374 - +0.1 364,407 + -0.9 364,408 - -0.9 364,439 + +1.1 364,439 + +0.5 364,439 + -1.0 364,439 + -0.5 364,440 - -1.9 364,440 - -1.5 364,451 + +1.1 364,452 - -1.5 364,452 - +1.4 364,464 - -0.9 364,620 + DZA65_RS01675 0.40 -1.1 364,620 + DZA65_RS01675 0.40 +0.1 364,651 - DZA65_RS01675 0.48 -2.0 364,698 + DZA65_RS01675 0.60 -1.3 364,699 - DZA65_RS01675 0.60 -0.0 364,699 - DZA65_RS01675 0.60 +0.1 364,723 + DZA65_RS01675 0.66 -1.1
Or see this region's nucleotide sequence