Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01540 and DZA65_RS01545 are separated by 280 nucleotides DZA65_RS01545 and DZA65_RS01550 are separated by 3 nucleotides DZA65_RS01550 and DZA65_RS01555 are separated by 4 nucleotides
DZA65_RS01540: DZA65_RS01540 - calcium/sodium antiporter, at 336,450 to 337,412
_RS01540
DZA65_RS01545: DZA65_RS01545 - phospholipid ABC transporter ATP-binding protein MlaF, at 337,693 to 338,502
_RS01545
DZA65_RS01550: DZA65_RS01550 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 338,506 to 339,288
_RS01550
DZA65_RS01555: DZA65_RS01555 - outer membrane lipid asymmetry maintenance protein MlaD, at 339,293 to 339,907
_RS01555
Position (kb) 337
338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 336.720 kb on - strand, within DZA65_RS01540 at 336.797 kb on + strand, within DZA65_RS01540 at 336.798 kb on - strand, within DZA65_RS01540 at 336.801 kb on - strand, within DZA65_RS01540 at 336.801 kb on - strand, within DZA65_RS01540 at 336.801 kb on - strand, within DZA65_RS01540 at 336.801 kb on - strand, within DZA65_RS01540 at 336.805 kb on + strand, within DZA65_RS01540 at 336.806 kb on - strand at 336.806 kb on - strand, within DZA65_RS01540 at 336.806 kb on - strand, within DZA65_RS01540 at 336.806 kb on - strand at 336.806 kb on - strand, within DZA65_RS01540 at 336.861 kb on - strand, within DZA65_RS01540 at 336.861 kb on - strand, within DZA65_RS01540 at 336.861 kb on - strand, within DZA65_RS01540 at 336.883 kb on - strand, within DZA65_RS01540 at 336.996 kb on - strand, within DZA65_RS01540 at 336.996 kb on - strand, within DZA65_RS01540 at 336.996 kb on - strand, within DZA65_RS01540 at 337.172 kb on + strand, within DZA65_RS01540 at 337.173 kb on - strand, within DZA65_RS01540 at 337.173 kb on - strand, within DZA65_RS01540 at 337.194 kb on + strand, within DZA65_RS01540 at 337.194 kb on + strand, within DZA65_RS01540 at 337.194 kb on + strand, within DZA65_RS01540 at 337.194 kb on + strand, within DZA65_RS01540 at 337.195 kb on - strand, within DZA65_RS01540 at 337.195 kb on - strand, within DZA65_RS01540 at 337.279 kb on - strand, within DZA65_RS01540 at 337.279 kb on - strand, within DZA65_RS01540 at 337.279 kb on - strand, within DZA65_RS01540 at 337.279 kb on - strand, within DZA65_RS01540 at 337.279 kb on - strand, within DZA65_RS01540 at 337.279 kb on - strand, within DZA65_RS01540 at 337.296 kb on - strand, within DZA65_RS01540 at 337.343 kb on - strand at 337.343 kb on - strand at 337.343 kb on - strand at 337.364 kb on - strand at 337.371 kb on + strand at 337.389 kb on + strand at 337.390 kb on - strand at 337.390 kb on - strand at 337.390 kb on - strand at 337.425 kb on - strand at 337.425 kb on - strand at 337.432 kb on + strand at 337.433 kb on - strand at 337.433 kb on - strand at 337.433 kb on - strand at 337.433 kb on - strand at 337.434 kb on + strand at 337.434 kb on + strand at 337.435 kb on - strand at 337.435 kb on - strand at 337.447 kb on - strand at 337.478 kb on + strand at 337.479 kb on - strand at 337.479 kb on - strand at 337.479 kb on - strand at 337.514 kb on - strand at 337.514 kb on - strand at 337.577 kb on + strand at 337.577 kb on + strand at 337.577 kb on + strand at 337.578 kb on - strand at 337.578 kb on - strand at 337.592 kb on - strand at 337.592 kb on - strand at 337.592 kb on - strand at 337.592 kb on - strand at 337.592 kb on - strand at 337.605 kb on + strand at 337.606 kb on - strand at 337.687 kb on + strand at 337.687 kb on + strand at 337.687 kb on + strand at 337.688 kb on - strand at 337.688 kb on - strand at 337.688 kb on - strand at 337.899 kb on + strand, within DZA65_RS01545 at 337.899 kb on + strand, within DZA65_RS01545 at 337.900 kb on - strand, within DZA65_RS01545 at 338.025 kb on + strand, within DZA65_RS01545 at 338.026 kb on - strand, within DZA65_RS01545 at 338.245 kb on - strand, within DZA65_RS01545 at 338.326 kb on + strand, within DZA65_RS01545 at 338.327 kb on - strand, within DZA65_RS01545 at 338.327 kb on - strand, within DZA65_RS01545 at 338.332 kb on + strand, within DZA65_RS01545 at 338.332 kb on + strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.333 kb on - strand, within DZA65_RS01545 at 338.337 kb on + strand, within DZA65_RS01545 at 338.468 kb on - strand at 338.497 kb on - strand at 338.497 kb on - strand at 338.497 kb on - strand at 338.497 kb on - strand at 338.500 kb on + strand at 338.500 kb on + strand at 338.501 kb on - strand at 338.501 kb on - strand at 338.501 kb on - strand at 338.501 kb on - strand at 338.501 kb on - strand at 338.510 kb on + strand at 338.510 kb on + strand at 338.511 kb on - strand at 338.650 kb on + strand, within DZA65_RS01550 at 338.650 kb on + strand at 338.651 kb on - strand, within DZA65_RS01550 at 338.651 kb on - strand, within DZA65_RS01550 at 338.651 kb on - strand, within DZA65_RS01550 at 338.651 kb on - strand, within DZA65_RS01550 at 338.651 kb on - strand, within DZA65_RS01550 at 338.651 kb on - strand, within DZA65_RS01550 at 338.652 kb on + strand, within DZA65_RS01550 at 338.688 kb on - strand, within DZA65_RS01550 at 338.697 kb on - strand, within DZA65_RS01550 at 338.697 kb on - strand, within DZA65_RS01550 at 338.732 kb on + strand, within DZA65_RS01550 at 338.733 kb on - strand, within DZA65_RS01550 at 338.733 kb on - strand, within DZA65_RS01550 at 338.733 kb on - strand, within DZA65_RS01550 at 338.743 kb on - strand, within DZA65_RS01550 at 338.746 kb on + strand, within DZA65_RS01550 at 338.747 kb on - strand, within DZA65_RS01550 at 338.747 kb on - strand, within DZA65_RS01550 at 338.747 kb on - strand, within DZA65_RS01550 at 338.747 kb on - strand, within DZA65_RS01550 at 338.747 kb on - strand, within DZA65_RS01550 at 338.892 kb on - strand, within DZA65_RS01550 at 338.892 kb on - strand, within DZA65_RS01550 at 338.899 kb on - strand, within DZA65_RS01550 at 338.915 kb on + strand, within DZA65_RS01550 at 338.915 kb on + strand, within DZA65_RS01550 at 338.916 kb on - strand, within DZA65_RS01550 at 338.916 kb on - strand, within DZA65_RS01550 at 339.243 kb on - strand at 339.327 kb on + strand at 339.328 kb on - strand at 339.363 kb on + strand, within DZA65_RS01555 at 339.363 kb on + strand, within DZA65_RS01555 at 339.363 kb on + strand at 339.364 kb on - strand, within DZA65_RS01555 at 339.364 kb on - strand, within DZA65_RS01555 at 339.364 kb on - strand, within DZA65_RS01555 at 339.410 kb on + strand, within DZA65_RS01555 at 339.411 kb on - strand, within DZA65_RS01555 at 339.436 kb on + strand, within DZA65_RS01555 at 339.449 kb on - strand, within DZA65_RS01555 at 339.483 kb on + strand, within DZA65_RS01555 at 339.483 kb on + strand, within DZA65_RS01555 at 339.483 kb on + strand, within DZA65_RS01555 at 339.484 kb on - strand, within DZA65_RS01555 at 339.484 kb on - strand, within DZA65_RS01555 at 339.484 kb on - strand, within DZA65_RS01555 at 339.484 kb on - strand, within DZA65_RS01555 at 339.502 kb on + strand, within DZA65_RS01555
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 336,720 - DZA65_RS01540 0.28 +0.3 336,797 + DZA65_RS01540 0.36 -1.6 336,798 - DZA65_RS01540 0.36 -0.6 336,801 - DZA65_RS01540 0.36 +0.6 336,801 - DZA65_RS01540 0.36 +1.1 336,801 - DZA65_RS01540 0.36 -1.4 336,801 - DZA65_RS01540 0.36 -0.9 336,805 + DZA65_RS01540 0.37 +0.1 336,806 - -0.2 336,806 - DZA65_RS01540 0.37 +1.3 336,806 - DZA65_RS01540 0.37 -0.7 336,806 - -1.4 336,806 - DZA65_RS01540 0.37 +0.3 336,861 - DZA65_RS01540 0.43 +1.1 336,861 - DZA65_RS01540 0.43 -0.9 336,861 - DZA65_RS01540 0.43 +0.6 336,883 - DZA65_RS01540 0.45 -0.4 336,996 - DZA65_RS01540 0.57 -0.9 336,996 - DZA65_RS01540 0.57 +1.1 336,996 - DZA65_RS01540 0.57 +0.3 337,172 + DZA65_RS01540 0.75 -0.7 337,173 - DZA65_RS01540 0.75 -1.2 337,173 - DZA65_RS01540 0.75 -1.2 337,194 + DZA65_RS01540 0.77 -2.4 337,194 + DZA65_RS01540 0.77 -2.8 337,194 + DZA65_RS01540 0.77 -1.2 337,194 + DZA65_RS01540 0.77 -1.4 337,195 - DZA65_RS01540 0.77 +1.2 337,195 - DZA65_RS01540 0.77 +0.1 337,279 - DZA65_RS01540 0.86 -0.4 337,279 - DZA65_RS01540 0.86 -0.7 337,279 - DZA65_RS01540 0.86 -1.6 337,279 - DZA65_RS01540 0.86 +0.7 337,279 - DZA65_RS01540 0.86 -0.4 337,279 - DZA65_RS01540 0.86 -0.2 337,296 - DZA65_RS01540 0.88 -1.3 337,343 - +0.4 337,343 - -1.4 337,343 - -2.4 337,364 - +0.4 337,371 + -0.1 337,389 + -1.4 337,390 - +0.1 337,390 - -0.8 337,390 - -0.4 337,425 - -0.4 337,425 - +1.7 337,432 + -1.2 337,433 - -1.1 337,433 - -0.3 337,433 - -0.4 337,433 - +1.1 337,434 + -0.4 337,434 + +0.9 337,435 - -1.6 337,435 - -0.6 337,447 - +0.9 337,478 + -0.4 337,479 - -0.9 337,479 - +0.6 337,479 - -0.4 337,514 - -0.8 337,514 - -0.9 337,577 + -0.9 337,577 + -0.2 337,577 + -0.8 337,578 - +0.1 337,578 - -0.3 337,592 - +0.4 337,592 - +1.1 337,592 - +0.9 337,592 - -0.4 337,592 - -0.3 337,605 + +0.4 337,606 - -0.6 337,687 + +0.6 337,687 + -1.4 337,687 + -1.6 337,688 - -0.9 337,688 - -1.0 337,688 - -0.2 337,899 + DZA65_RS01545 0.25 -0.2 337,899 + DZA65_RS01545 0.25 -0.9 337,900 - DZA65_RS01545 0.26 +1.1 338,025 + DZA65_RS01545 0.41 +0.4 338,026 - DZA65_RS01545 0.41 +0.6 338,245 - DZA65_RS01545 0.68 +1.1 338,326 + DZA65_RS01545 0.78 -0.4 338,327 - DZA65_RS01545 0.78 -1.9 338,327 - DZA65_RS01545 0.78 +3.1 338,332 + DZA65_RS01545 0.79 -0.9 338,332 + DZA65_RS01545 0.79 -0.2 338,333 - DZA65_RS01545 0.79 +0.1 338,333 - DZA65_RS01545 0.79 -1.6 338,333 - DZA65_RS01545 0.79 -1.2 338,333 - DZA65_RS01545 0.79 +0.4 338,333 - DZA65_RS01545 0.79 +1.7 338,333 - DZA65_RS01545 0.79 +0.5 338,333 - DZA65_RS01545 0.79 -1.4 338,333 - DZA65_RS01545 0.79 -0.4 338,337 + DZA65_RS01545 0.80 +2.1 338,468 - +0.3 338,497 - -0.0 338,497 - -0.6 338,497 - -1.4 338,497 - -0.7 338,500 + +0.1 338,500 + -0.1 338,501 - +1.3 338,501 - -1.1 338,501 - +0.1 338,501 - -1.4 338,501 - -1.2 338,510 + -2.0 338,510 + -1.4 338,511 - -1.9 338,650 + DZA65_RS01550 0.18 +0.7 338,650 + -1.9 338,651 - DZA65_RS01550 0.19 -0.9 338,651 - DZA65_RS01550 0.19 -0.7 338,651 - DZA65_RS01550 0.19 +0.2 338,651 - DZA65_RS01550 0.19 +2.1 338,651 - DZA65_RS01550 0.19 +1.1 338,651 - DZA65_RS01550 0.19 +0.6 338,652 + DZA65_RS01550 0.19 -0.3 338,688 - DZA65_RS01550 0.23 -2.0 338,697 - DZA65_RS01550 0.24 -1.7 338,697 - DZA65_RS01550 0.24 +1.3 338,732 + DZA65_RS01550 0.29 -0.0 338,733 - DZA65_RS01550 0.29 -1.2 338,733 - DZA65_RS01550 0.29 +0.3 338,733 - DZA65_RS01550 0.29 -0.2 338,743 - DZA65_RS01550 0.30 +2.1 338,746 + DZA65_RS01550 0.31 -0.9 338,747 - DZA65_RS01550 0.31 -1.7 338,747 - DZA65_RS01550 0.31 -0.1 338,747 - DZA65_RS01550 0.31 +0.1 338,747 - DZA65_RS01550 0.31 -0.1 338,747 - DZA65_RS01550 0.31 +1.1 338,892 - DZA65_RS01550 0.49 -1.2 338,892 - DZA65_RS01550 0.49 -1.2 338,899 - DZA65_RS01550 0.50 +0.6 338,915 + DZA65_RS01550 0.52 +0.1 338,915 + DZA65_RS01550 0.52 -0.7 338,916 - DZA65_RS01550 0.52 +0.7 338,916 - DZA65_RS01550 0.52 +0.3 339,243 - -1.7 339,327 + -0.9 339,328 - -0.4 339,363 + DZA65_RS01555 0.11 +0.6 339,363 + DZA65_RS01555 0.11 +1.3 339,363 + +0.7 339,364 - DZA65_RS01555 0.12 +1.0 339,364 - DZA65_RS01555 0.12 +0.1 339,364 - DZA65_RS01555 0.12 +1.1 339,410 + DZA65_RS01555 0.19 +0.5 339,411 - DZA65_RS01555 0.19 -1.7 339,436 + DZA65_RS01555 0.23 -0.4 339,449 - DZA65_RS01555 0.25 -0.9 339,483 + DZA65_RS01555 0.31 -0.7 339,483 + DZA65_RS01555 0.31 -1.0 339,483 + DZA65_RS01555 0.31 +0.1 339,484 - DZA65_RS01555 0.31 -0.8 339,484 - DZA65_RS01555 0.31 -1.2 339,484 - DZA65_RS01555 0.31 -2.3 339,484 - DZA65_RS01555 0.31 +0.5 339,502 + DZA65_RS01555 0.34 +0.1
Or see this region's nucleotide sequence