Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01540

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS01535 and DZA65_RS01540 are separated by 30 nucleotidesDZA65_RS01540 and DZA65_RS01545 are separated by 280 nucleotides DZA65_RS01535: DZA65_RS01535 - arabinose-5-phosphate isomerase KdsD, at 335,433 to 336,419 _RS01535 DZA65_RS01540: DZA65_RS01540 - calcium/sodium antiporter, at 336,450 to 337,412 _RS01540 DZA65_RS01545: DZA65_RS01545 - phospholipid ABC transporter ATP-binding protein MlaF, at 337,693 to 338,502 _RS01545 Position (kb) 336 337 338Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 336.443 kb on - strandat 336.443 kb on - strandat 336.443 kb on - strandat 336.452 kb on - strandat 336.479 kb on - strandat 336.479 kb on - strandat 336.587 kb on - strand, within DZA65_RS01540at 336.651 kb on + strand, within DZA65_RS01540at 336.651 kb on + strand, within DZA65_RS01540at 336.652 kb on - strand, within DZA65_RS01540at 336.662 kb on + strand, within DZA65_RS01540at 336.668 kb on + strand, within DZA65_RS01540at 336.668 kb on + strand, within DZA65_RS01540at 336.668 kb on + strand, within DZA65_RS01540at 336.669 kb on - strand, within DZA65_RS01540at 336.720 kb on - strand, within DZA65_RS01540at 336.797 kb on + strand, within DZA65_RS01540at 336.798 kb on - strand, within DZA65_RS01540at 336.801 kb on - strand, within DZA65_RS01540at 336.801 kb on - strand, within DZA65_RS01540at 336.801 kb on - strand, within DZA65_RS01540at 336.801 kb on - strand, within DZA65_RS01540at 336.805 kb on + strand, within DZA65_RS01540at 336.806 kb on - strandat 336.806 kb on - strand, within DZA65_RS01540at 336.806 kb on - strand, within DZA65_RS01540at 336.806 kb on - strandat 336.806 kb on - strand, within DZA65_RS01540at 336.861 kb on - strand, within DZA65_RS01540at 336.861 kb on - strand, within DZA65_RS01540at 336.861 kb on - strand, within DZA65_RS01540at 336.883 kb on - strand, within DZA65_RS01540at 336.996 kb on - strand, within DZA65_RS01540at 336.996 kb on - strand, within DZA65_RS01540at 336.996 kb on - strand, within DZA65_RS01540at 337.172 kb on + strand, within DZA65_RS01540at 337.173 kb on - strand, within DZA65_RS01540at 337.173 kb on - strand, within DZA65_RS01540at 337.194 kb on + strand, within DZA65_RS01540at 337.194 kb on + strand, within DZA65_RS01540at 337.194 kb on + strand, within DZA65_RS01540at 337.194 kb on + strand, within DZA65_RS01540at 337.195 kb on - strand, within DZA65_RS01540at 337.195 kb on - strand, within DZA65_RS01540at 337.279 kb on - strand, within DZA65_RS01540at 337.279 kb on - strand, within DZA65_RS01540at 337.279 kb on - strand, within DZA65_RS01540at 337.279 kb on - strand, within DZA65_RS01540at 337.279 kb on - strand, within DZA65_RS01540at 337.279 kb on - strand, within DZA65_RS01540at 337.296 kb on - strand, within DZA65_RS01540at 337.343 kb on - strandat 337.343 kb on - strandat 337.343 kb on - strandat 337.364 kb on - strandat 337.371 kb on + strandat 337.389 kb on + strandat 337.390 kb on - strandat 337.390 kb on - strandat 337.390 kb on - strandat 337.425 kb on - strandat 337.425 kb on - strandat 337.432 kb on + strandat 337.433 kb on - strandat 337.433 kb on - strandat 337.433 kb on - strandat 337.433 kb on - strandat 337.434 kb on + strandat 337.434 kb on + strandat 337.435 kb on - strandat 337.435 kb on - strandat 337.447 kb on - strandat 337.478 kb on + strandat 337.479 kb on - strandat 337.479 kb on - strandat 337.479 kb on - strandat 337.514 kb on - strandat 337.514 kb on - strandat 337.577 kb on + strandat 337.577 kb on + strandat 337.577 kb on + strandat 337.578 kb on - strandat 337.578 kb on - strandat 337.592 kb on - strandat 337.592 kb on - strandat 337.592 kb on - strandat 337.592 kb on - strandat 337.592 kb on - strandat 337.605 kb on + strandat 337.606 kb on - strandat 337.687 kb on + strandat 337.687 kb on + strandat 337.687 kb on + strandat 337.688 kb on - strandat 337.688 kb on - strandat 337.688 kb on - strandat 337.899 kb on + strand, within DZA65_RS01545at 337.899 kb on + strand, within DZA65_RS01545at 337.900 kb on - strand, within DZA65_RS01545at 338.025 kb on + strand, within DZA65_RS01545at 338.026 kb on - strand, within DZA65_RS01545at 338.245 kb on - strand, within DZA65_RS01545at 338.326 kb on + strand, within DZA65_RS01545at 338.327 kb on - strand, within DZA65_RS01545at 338.327 kb on - strand, within DZA65_RS01545at 338.332 kb on + strand, within DZA65_RS01545at 338.332 kb on + strand, within DZA65_RS01545at 338.333 kb on - strand, within DZA65_RS01545at 338.333 kb on - strand, within DZA65_RS01545at 338.333 kb on - strand, within DZA65_RS01545at 338.333 kb on - strand, within DZA65_RS01545at 338.333 kb on - strand, within DZA65_RS01545at 338.333 kb on - strand, within DZA65_RS01545at 338.333 kb on - strand, within DZA65_RS01545at 338.333 kb on - strand, within DZA65_RS01545at 338.337 kb on + strand, within DZA65_RS01545

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
336,443 - +0.1
336,443 - +2.7
336,443 - -0.4
336,452 - -0.6
336,479 - +0.5
336,479 - +1.7
336,587 - DZA65_RS01540 0.14 -0.8
336,651 + DZA65_RS01540 0.21 -0.9
336,651 + DZA65_RS01540 0.21 -1.6
336,652 - DZA65_RS01540 0.21 -0.2
336,662 + DZA65_RS01540 0.22 -2.3
336,668 + DZA65_RS01540 0.23 -1.2
336,668 + DZA65_RS01540 0.23 +1.1
336,668 + DZA65_RS01540 0.23 -2.5
336,669 - DZA65_RS01540 0.23 -1.0
336,720 - DZA65_RS01540 0.28 +0.3
336,797 + DZA65_RS01540 0.36 -1.6
336,798 - DZA65_RS01540 0.36 -0.6
336,801 - DZA65_RS01540 0.36 +0.6
336,801 - DZA65_RS01540 0.36 +1.1
336,801 - DZA65_RS01540 0.36 -1.4
336,801 - DZA65_RS01540 0.36 -0.9
336,805 + DZA65_RS01540 0.37 +0.1
336,806 - -0.2
336,806 - DZA65_RS01540 0.37 +1.3
336,806 - DZA65_RS01540 0.37 -0.7
336,806 - -1.4
336,806 - DZA65_RS01540 0.37 +0.3
336,861 - DZA65_RS01540 0.43 +1.1
336,861 - DZA65_RS01540 0.43 -0.9
336,861 - DZA65_RS01540 0.43 +0.6
336,883 - DZA65_RS01540 0.45 -0.4
336,996 - DZA65_RS01540 0.57 -0.9
336,996 - DZA65_RS01540 0.57 +1.1
336,996 - DZA65_RS01540 0.57 +0.3
337,172 + DZA65_RS01540 0.75 -0.7
337,173 - DZA65_RS01540 0.75 -1.2
337,173 - DZA65_RS01540 0.75 -1.2
337,194 + DZA65_RS01540 0.77 -2.4
337,194 + DZA65_RS01540 0.77 -2.8
337,194 + DZA65_RS01540 0.77 -1.2
337,194 + DZA65_RS01540 0.77 -1.4
337,195 - DZA65_RS01540 0.77 +1.2
337,195 - DZA65_RS01540 0.77 +0.1
337,279 - DZA65_RS01540 0.86 -0.4
337,279 - DZA65_RS01540 0.86 -0.7
337,279 - DZA65_RS01540 0.86 -1.6
337,279 - DZA65_RS01540 0.86 +0.7
337,279 - DZA65_RS01540 0.86 -0.4
337,279 - DZA65_RS01540 0.86 -0.2
337,296 - DZA65_RS01540 0.88 -1.3
337,343 - +0.4
337,343 - -1.4
337,343 - -2.4
337,364 - +0.4
337,371 + -0.1
337,389 + -1.4
337,390 - +0.1
337,390 - -0.8
337,390 - -0.4
337,425 - -0.4
337,425 - +1.7
337,432 + -1.2
337,433 - -1.1
337,433 - -0.3
337,433 - -0.4
337,433 - +1.1
337,434 + -0.4
337,434 + +0.9
337,435 - -1.6
337,435 - -0.6
337,447 - +0.9
337,478 + -0.4
337,479 - -0.9
337,479 - +0.6
337,479 - -0.4
337,514 - -0.8
337,514 - -0.9
337,577 + -0.9
337,577 + -0.2
337,577 + -0.8
337,578 - +0.1
337,578 - -0.3
337,592 - +0.4
337,592 - +1.1
337,592 - +0.9
337,592 - -0.4
337,592 - -0.3
337,605 + +0.4
337,606 - -0.6
337,687 + +0.6
337,687 + -1.4
337,687 + -1.6
337,688 - -0.9
337,688 - -1.0
337,688 - -0.2
337,899 + DZA65_RS01545 0.25 -0.2
337,899 + DZA65_RS01545 0.25 -0.9
337,900 - DZA65_RS01545 0.26 +1.1
338,025 + DZA65_RS01545 0.41 +0.4
338,026 - DZA65_RS01545 0.41 +0.6
338,245 - DZA65_RS01545 0.68 +1.1
338,326 + DZA65_RS01545 0.78 -0.4
338,327 - DZA65_RS01545 0.78 -1.9
338,327 - DZA65_RS01545 0.78 +3.1
338,332 + DZA65_RS01545 0.79 -0.9
338,332 + DZA65_RS01545 0.79 -0.2
338,333 - DZA65_RS01545 0.79 +0.1
338,333 - DZA65_RS01545 0.79 -1.6
338,333 - DZA65_RS01545 0.79 -1.2
338,333 - DZA65_RS01545 0.79 +0.4
338,333 - DZA65_RS01545 0.79 +1.7
338,333 - DZA65_RS01545 0.79 +0.5
338,333 - DZA65_RS01545 0.79 -1.4
338,333 - DZA65_RS01545 0.79 -0.4
338,337 + DZA65_RS01545 0.80 +2.1

Or see this region's nucleotide sequence