Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00800 and DZA65_RS00805 are separated by 151 nucleotides DZA65_RS00805 and DZA65_RS00810 overlap by 4 nucleotides
DZA65_RS00800: DZA65_RS00800 - O-antigen ligase family protein, at 179,494 to 180,702
_RS00800
DZA65_RS00805: DZA65_RS00805 - glycosyltransferase family 4 protein, at 180,854 to 181,972
_RS00805
DZA65_RS00810: DZA65_RS00810 - putative lipopolysaccharide heptosyltransferase III, at 181,969 to 183,054
_RS00810
Position (kb) 180
181
182 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 179.962 kb on + strand, within DZA65_RS00800 at 179.962 kb on + strand, within DZA65_RS00800 at 180.073 kb on + strand, within DZA65_RS00800 at 180.073 kb on + strand, within DZA65_RS00800 at 180.074 kb on - strand, within DZA65_RS00800 at 180.333 kb on - strand, within DZA65_RS00800 at 180.426 kb on - strand, within DZA65_RS00800 at 180.516 kb on + strand, within DZA65_RS00800 at 180.516 kb on + strand, within DZA65_RS00800 at 180.666 kb on + strand at 180.673 kb on + strand at 180.674 kb on - strand at 180.674 kb on - strand at 180.696 kb on + strand at 180.696 kb on + strand at 180.696 kb on + strand at 180.697 kb on - strand at 180.735 kb on + strand at 180.762 kb on + strand at 180.763 kb on - strand at 180.779 kb on - strand at 180.806 kb on + strand at 180.806 kb on + strand at 180.806 kb on + strand at 180.806 kb on + strand at 180.806 kb on + strand at 180.806 kb on + strand at 180.806 kb on + strand at 180.806 kb on + strand at 180.806 kb on + strand at 180.806 kb on + strand at 180.806 kb on + strand at 180.806 kb on + strand at 180.806 kb on + strand at 180.806 kb on + strand at 180.807 kb on - strand at 180.807 kb on - strand at 180.807 kb on - strand at 180.807 kb on - strand at 180.807 kb on - strand at 180.807 kb on - strand at 180.811 kb on + strand at 180.811 kb on + strand at 180.811 kb on + strand at 180.822 kb on + strand at 180.823 kb on - strand at 180.823 kb on - strand at 180.823 kb on - strand at 180.823 kb on - strand at 180.823 kb on - strand at 182.012 kb on - strand at 182.200 kb on - strand, within DZA65_RS00810 at 182.317 kb on - strand, within DZA65_RS00810 at 182.413 kb on - strand, within DZA65_RS00810 at 182.497 kb on + strand, within DZA65_RS00810 at 182.510 kb on - strand, within DZA65_RS00810 at 182.510 kb on - strand, within DZA65_RS00810 at 182.546 kb on - strand, within DZA65_RS00810 at 182.546 kb on - strand, within DZA65_RS00810 at 182.746 kb on - strand, within DZA65_RS00810 at 182.775 kb on - strand, within DZA65_RS00810 at 182.775 kb on - strand, within DZA65_RS00810
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 179,962 + DZA65_RS00800 0.39 -2.1 179,962 + DZA65_RS00800 0.39 -0.8 180,073 + DZA65_RS00800 0.48 -1.3 180,073 + DZA65_RS00800 0.48 -2.4 180,074 - DZA65_RS00800 0.48 -0.0 180,333 - DZA65_RS00800 0.69 -3.1 180,426 - DZA65_RS00800 0.77 -1.8 180,516 + DZA65_RS00800 0.85 -4.1 180,516 + DZA65_RS00800 0.85 -3.8 180,666 + +1.8 180,673 + -0.3 180,674 - +0.5 180,674 - +0.2 180,696 + -1.4 180,696 + -0.8 180,696 + +1.2 180,697 - +0.2 180,735 + -1.6 180,762 + -0.2 180,763 - -1.0 180,779 - +1.2 180,806 + -0.4 180,806 + -1.6 180,806 + +0.8 180,806 + -0.6 180,806 + -0.5 180,806 + -0.8 180,806 + -0.2 180,806 + -0.6 180,806 + -0.5 180,806 + -1.2 180,806 + -0.8 180,806 + -0.1 180,806 + -0.8 180,806 + -1.1 180,807 - +0.3 180,807 - -1.2 180,807 - -1.4 180,807 - -1.8 180,807 - -1.2 180,807 - -1.1 180,811 + +0.6 180,811 + -0.6 180,811 + -0.9 180,822 + +2.8 180,823 - +0.1 180,823 - -1.1 180,823 - +0.0 180,823 - -0.8 180,823 - -1.3 182,012 - -1.3 182,200 - DZA65_RS00810 0.21 -0.6 182,317 - DZA65_RS00810 0.32 +0.2 182,413 - DZA65_RS00810 0.41 -1.6 182,497 + DZA65_RS00810 0.49 -0.6 182,510 - DZA65_RS00810 0.50 -1.1 182,510 - DZA65_RS00810 0.50 +0.5 182,546 - DZA65_RS00810 0.53 -0.6 182,546 - DZA65_RS00810 0.53 -0.3 182,746 - DZA65_RS00810 0.72 -1.8 182,775 - DZA65_RS00810 0.74 +1.2 182,775 - DZA65_RS00810 0.74 -1.5
Or see this region's nucleotide sequence