Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00640 and DZA65_RS00645 are separated by 19 nucleotides DZA65_RS00645 and DZA65_RS00650 are separated by 19 nucleotides DZA65_RS00650 and DZA65_RS00655 are separated by 89 nucleotides DZA65_RS00655 and DZA65_RS00660 overlap by 32 nucleotides
DZA65_RS00640: DZA65_RS00640 - hypothetical protein, at 149,119 to 149,883
_RS00640
DZA65_RS00645: DZA65_RS00645 - hypothetical protein, at 149,903 to 150,667
_RS00645
DZA65_RS00650: DZA65_RS00650 - hypothetical protein, at 150,687 to 151,449
_RS00650
DZA65_RS00655: DZA65_RS00655 - ABC transporter ATP-binding protein, at 151,539 to 152,240
_RS00655
DZA65_RS00660: DZA65_RS00660 - ABC transporter permease, at 152,209 to 153,453
_RS00660
Position (kb) 150
151
152 Strain fitness (log2 ratio) -2
-1
0
1
2 at 149.704 kb on + strand, within DZA65_RS00640 at 149.704 kb on - strand, within DZA65_RS00640 at 149.705 kb on - strand, within DZA65_RS00640 at 149.723 kb on + strand, within DZA65_RS00640 at 149.750 kb on - strand, within DZA65_RS00640 at 149.903 kb on - strand at 150.319 kb on + strand, within DZA65_RS00645 at 150.323 kb on + strand, within DZA65_RS00645 at 150.323 kb on + strand, within DZA65_RS00645 at 150.343 kb on + strand at 150.343 kb on + strand, within DZA65_RS00645 at 150.343 kb on + strand, within DZA65_RS00645 at 150.380 kb on + strand, within DZA65_RS00645 at 150.380 kb on + strand, within DZA65_RS00645 at 150.380 kb on + strand, within DZA65_RS00645 at 150.380 kb on + strand, within DZA65_RS00645 at 150.381 kb on - strand, within DZA65_RS00645 at 150.381 kb on - strand, within DZA65_RS00645 at 150.381 kb on - strand, within DZA65_RS00645 at 150.381 kb on - strand, within DZA65_RS00645 at 150.381 kb on - strand, within DZA65_RS00645 at 150.434 kb on + strand, within DZA65_RS00645 at 150.434 kb on + strand, within DZA65_RS00645 at 150.434 kb on + strand, within DZA65_RS00645 at 150.435 kb on - strand, within DZA65_RS00645 at 150.435 kb on - strand, within DZA65_RS00645 at 150.435 kb on - strand, within DZA65_RS00645 at 150.435 kb on - strand, within DZA65_RS00645 at 150.435 kb on - strand, within DZA65_RS00645 at 150.435 kb on - strand, within DZA65_RS00645 at 150.435 kb on - strand, within DZA65_RS00645 at 150.435 kb on - strand, within DZA65_RS00645 at 150.435 kb on - strand, within DZA65_RS00645 at 150.463 kb on + strand, within DZA65_RS00645 at 150.463 kb on + strand, within DZA65_RS00645 at 150.463 kb on + strand, within DZA65_RS00645 at 150.463 kb on + strand, within DZA65_RS00645 at 150.463 kb on + strand, within DZA65_RS00645 at 150.463 kb on + strand, within DZA65_RS00645 at 150.463 kb on + strand, within DZA65_RS00645 at 150.463 kb on + strand, within DZA65_RS00645 at 150.464 kb on - strand, within DZA65_RS00645 at 150.464 kb on - strand, within DZA65_RS00645 at 150.464 kb on - strand, within DZA65_RS00645 at 150.464 kb on - strand, within DZA65_RS00645 at 150.464 kb on - strand, within DZA65_RS00645 at 150.464 kb on - strand, within DZA65_RS00645 at 150.464 kb on - strand, within DZA65_RS00645 at 150.464 kb on - strand, within DZA65_RS00645 at 150.467 kb on + strand, within DZA65_RS00645 at 150.468 kb on - strand, within DZA65_RS00645 at 150.468 kb on - strand, within DZA65_RS00645 at 150.489 kb on - strand, within DZA65_RS00645 at 150.489 kb on - strand, within DZA65_RS00645 at 150.507 kb on + strand, within DZA65_RS00645 at 150.508 kb on - strand, within DZA65_RS00645 at 150.533 kb on + strand, within DZA65_RS00645 at 150.533 kb on + strand, within DZA65_RS00645 at 151.105 kb on + strand, within DZA65_RS00650 at 151.105 kb on + strand, within DZA65_RS00650 at 151.162 kb on + strand, within DZA65_RS00650 at 151.162 kb on + strand, within DZA65_RS00650 at 151.162 kb on + strand, within DZA65_RS00650 at 151.163 kb on - strand, within DZA65_RS00650 at 151.163 kb on - strand, within DZA65_RS00650 at 151.163 kb on - strand, within DZA65_RS00650 at 151.163 kb on - strand, within DZA65_RS00650 at 151.163 kb on - strand, within DZA65_RS00650 at 151.163 kb on - strand, within DZA65_RS00650 at 151.163 kb on - strand, within DZA65_RS00650 at 151.163 kb on - strand, within DZA65_RS00650 at 151.163 kb on - strand, within DZA65_RS00650 at 151.206 kb on - strand, within DZA65_RS00650 at 151.216 kb on + strand, within DZA65_RS00650 at 151.216 kb on + strand, within DZA65_RS00650 at 151.216 kb on + strand, within DZA65_RS00650 at 151.217 kb on - strand, within DZA65_RS00650 at 151.217 kb on - strand, within DZA65_RS00650 at 151.217 kb on - strand, within DZA65_RS00650 at 151.217 kb on - strand, within DZA65_RS00650 at 151.217 kb on - strand, within DZA65_RS00650 at 151.224 kb on + strand, within DZA65_RS00650 at 151.249 kb on + strand, within DZA65_RS00650 at 151.249 kb on + strand, within DZA65_RS00650 at 151.249 kb on + strand, within DZA65_RS00650 at 151.250 kb on - strand, within DZA65_RS00650 at 151.250 kb on - strand, within DZA65_RS00650 at 151.250 kb on - strand, within DZA65_RS00650 at 151.250 kb on - strand, within DZA65_RS00650 at 151.250 kb on - strand, within DZA65_RS00650 at 151.250 kb on - strand, within DZA65_RS00650 at 151.250 kb on - strand, within DZA65_RS00650 at 151.270 kb on + strand, within DZA65_RS00650 at 151.271 kb on - strand, within DZA65_RS00650 at 151.271 kb on - strand, within DZA65_RS00650 at 151.416 kb on - strand at 151.493 kb on + strand at 151.493 kb on + strand at 151.493 kb on + strand at 151.493 kb on + strand at 151.494 kb on - strand at 151.494 kb on - strand at 151.494 kb on - strand at 151.494 kb on - strand at 151.497 kb on + strand at 151.497 kb on + strand at 151.497 kb on + strand at 151.497 kb on + strand at 151.497 kb on + strand at 151.497 kb on + strand at 151.497 kb on + strand at 151.498 kb on - strand at 151.498 kb on - strand at 151.498 kb on - strand at 151.498 kb on - strand at 151.498 kb on - strand at 151.509 kb on - strand at 151.574 kb on - strand at 151.593 kb on + strand at 151.594 kb on - strand at 151.610 kb on + strand, within DZA65_RS00655 at 151.610 kb on + strand, within DZA65_RS00655 at 151.649 kb on + strand, within DZA65_RS00655 at 151.691 kb on + strand, within DZA65_RS00655 at 151.692 kb on - strand, within DZA65_RS00655 at 151.698 kb on - strand, within DZA65_RS00655 at 151.698 kb on - strand, within DZA65_RS00655 at 151.698 kb on - strand, within DZA65_RS00655 at 151.698 kb on - strand, within DZA65_RS00655 at 151.806 kb on - strand, within DZA65_RS00655 at 151.825 kb on + strand, within DZA65_RS00655 at 151.825 kb on + strand, within DZA65_RS00655 at 151.826 kb on - strand, within DZA65_RS00655 at 151.891 kb on - strand, within DZA65_RS00655 at 151.898 kb on + strand, within DZA65_RS00655 at 151.898 kb on + strand, within DZA65_RS00655 at 151.898 kb on + strand, within DZA65_RS00655 at 151.898 kb on + strand, within DZA65_RS00655 at 151.898 kb on + strand, within DZA65_RS00655 at 151.899 kb on - strand, within DZA65_RS00655 at 151.899 kb on - strand, within DZA65_RS00655 at 151.899 kb on - strand at 151.900 kb on + strand, within DZA65_RS00655 at 151.901 kb on - strand, within DZA65_RS00655 at 151.901 kb on - strand, within DZA65_RS00655 at 151.901 kb on - strand, within DZA65_RS00655 at 152.073 kb on - strand, within DZA65_RS00655 at 152.113 kb on + strand, within DZA65_RS00655 at 152.113 kb on + strand, within DZA65_RS00655 at 152.152 kb on + strand, within DZA65_RS00655 at 152.257 kb on + strand at 152.258 kb on - strand at 152.339 kb on + strand, within DZA65_RS00660 at 152.339 kb on + strand, within DZA65_RS00660 at 152.339 kb on + strand, within DZA65_RS00660 at 152.339 kb on + strand, within DZA65_RS00660 at 152.339 kb on + strand, within DZA65_RS00660 at 152.339 kb on + strand, within DZA65_RS00660 at 152.340 kb on - strand, within DZA65_RS00660 at 152.340 kb on - strand, within DZA65_RS00660 at 152.340 kb on - strand, within DZA65_RS00660 at 152.340 kb on - strand, within DZA65_RS00660 at 152.340 kb on - strand, within DZA65_RS00660 at 152.343 kb on + strand, within DZA65_RS00660 at 152.343 kb on + strand, within DZA65_RS00660 at 152.343 kb on + strand, within DZA65_RS00660 at 152.343 kb on + strand, within DZA65_RS00660 at 152.343 kb on + strand, within DZA65_RS00660 at 152.343 kb on + strand, within DZA65_RS00660 at 152.344 kb on - strand, within DZA65_RS00660 at 152.344 kb on - strand, within DZA65_RS00660 at 152.344 kb on - strand, within DZA65_RS00660 at 152.344 kb on - strand, within DZA65_RS00660 at 152.344 kb on - strand, within DZA65_RS00660 at 152.344 kb on - strand, within DZA65_RS00660 at 152.344 kb on - strand, within DZA65_RS00660 at 152.410 kb on - strand, within DZA65_RS00660 at 152.417 kb on + strand, within DZA65_RS00660 at 152.418 kb on - strand, within DZA65_RS00660 at 152.418 kb on - strand, within DZA65_RS00660 at 152.418 kb on - strand, within DZA65_RS00660 at 152.427 kb on + strand, within DZA65_RS00660 at 152.427 kb on + strand, within DZA65_RS00660 at 152.428 kb on - strand, within DZA65_RS00660
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 149,704 + DZA65_RS00640 0.76 +0.2 149,704 - DZA65_RS00640 0.76 -1.6 149,705 - DZA65_RS00640 0.77 +0.7 149,723 + DZA65_RS00640 0.79 -1.5 149,750 - DZA65_RS00640 0.82 -1.0 149,903 - -0.6 150,319 + DZA65_RS00645 0.54 -0.2 150,323 + DZA65_RS00645 0.55 -1.8 150,323 + DZA65_RS00645 0.55 -0.8 150,343 + -1.1 150,343 + DZA65_RS00645 0.58 +1.8 150,343 + DZA65_RS00645 0.58 -0.9 150,380 + DZA65_RS00645 0.62 -1.6 150,380 + DZA65_RS00645 0.62 -0.1 150,380 + DZA65_RS00645 0.62 +0.2 150,380 + DZA65_RS00645 0.62 -0.7 150,381 - DZA65_RS00645 0.62 -0.5 150,381 - DZA65_RS00645 0.62 +0.6 150,381 - DZA65_RS00645 0.62 +0.4 150,381 - DZA65_RS00645 0.62 -0.7 150,381 - DZA65_RS00645 0.62 -0.4 150,434 + DZA65_RS00645 0.69 +0.2 150,434 + DZA65_RS00645 0.69 +0.9 150,434 + DZA65_RS00645 0.69 +0.9 150,435 - DZA65_RS00645 0.70 -0.4 150,435 - DZA65_RS00645 0.70 +1.2 150,435 - DZA65_RS00645 0.70 -1.0 150,435 - DZA65_RS00645 0.70 -0.2 150,435 - DZA65_RS00645 0.70 -2.4 150,435 - DZA65_RS00645 0.70 +1.5 150,435 - DZA65_RS00645 0.70 -0.2 150,435 - DZA65_RS00645 0.70 +1.2 150,435 - DZA65_RS00645 0.70 +0.1 150,463 + DZA65_RS00645 0.73 +1.2 150,463 + DZA65_RS00645 0.73 -0.1 150,463 + DZA65_RS00645 0.73 +1.2 150,463 + DZA65_RS00645 0.73 +1.5 150,463 + DZA65_RS00645 0.73 +0.2 150,463 + DZA65_RS00645 0.73 +0.0 150,463 + DZA65_RS00645 0.73 -1.0 150,463 + DZA65_RS00645 0.73 +0.2 150,464 - DZA65_RS00645 0.73 -0.1 150,464 - DZA65_RS00645 0.73 +0.1 150,464 - DZA65_RS00645 0.73 -1.0 150,464 - DZA65_RS00645 0.73 +0.0 150,464 - DZA65_RS00645 0.73 -1.6 150,464 - DZA65_RS00645 0.73 -0.4 150,464 - DZA65_RS00645 0.73 +0.0 150,464 - DZA65_RS00645 0.73 -0.0 150,467 + DZA65_RS00645 0.74 +1.2 150,468 - DZA65_RS00645 0.74 +0.9 150,468 - DZA65_RS00645 0.74 +0.3 150,489 - DZA65_RS00645 0.77 -0.7 150,489 - DZA65_RS00645 0.77 -0.6 150,507 + DZA65_RS00645 0.79 -1.1 150,508 - DZA65_RS00645 0.79 -1.2 150,533 + DZA65_RS00645 0.82 +0.2 150,533 + DZA65_RS00645 0.82 -0.4 151,105 + DZA65_RS00650 0.55 -0.8 151,105 + DZA65_RS00650 0.55 +0.3 151,162 + DZA65_RS00650 0.62 -0.1 151,162 + DZA65_RS00650 0.62 +0.5 151,162 + DZA65_RS00650 0.62 -1.4 151,163 - DZA65_RS00650 0.62 -0.4 151,163 - DZA65_RS00650 0.62 +1.2 151,163 - DZA65_RS00650 0.62 -1.1 151,163 - DZA65_RS00650 0.62 -2.0 151,163 - DZA65_RS00650 0.62 +1.5 151,163 - DZA65_RS00650 0.62 -0.4 151,163 - DZA65_RS00650 0.62 -0.7 151,163 - DZA65_RS00650 0.62 -0.8 151,163 - DZA65_RS00650 0.62 -0.5 151,206 - DZA65_RS00650 0.68 -0.6 151,216 + DZA65_RS00650 0.69 -1.8 151,216 + DZA65_RS00650 0.69 -0.9 151,216 + DZA65_RS00650 0.69 -1.1 151,217 - DZA65_RS00650 0.69 -0.7 151,217 - DZA65_RS00650 0.69 -1.0 151,217 - DZA65_RS00650 0.69 -0.4 151,217 - DZA65_RS00650 0.69 -0.1 151,217 - DZA65_RS00650 0.69 +0.3 151,224 + DZA65_RS00650 0.70 -0.4 151,249 + DZA65_RS00650 0.74 +0.8 151,249 + DZA65_RS00650 0.74 -1.1 151,249 + DZA65_RS00650 0.74 -1.8 151,250 - DZA65_RS00650 0.74 -0.4 151,250 - DZA65_RS00650 0.74 +1.2 151,250 - DZA65_RS00650 0.74 +1.2 151,250 - DZA65_RS00650 0.74 -0.4 151,250 - DZA65_RS00650 0.74 +0.0 151,250 - DZA65_RS00650 0.74 +0.3 151,250 - DZA65_RS00650 0.74 -1.8 151,270 + DZA65_RS00650 0.76 +0.2 151,271 - DZA65_RS00650 0.77 +1.2 151,271 - DZA65_RS00650 0.77 -0.4 151,416 - -1.0 151,493 + -0.5 151,493 + -0.8 151,493 + -1.7 151,493 + -0.8 151,494 - +1.9 151,494 - -0.7 151,494 - -2.3 151,494 - -0.4 151,497 + +0.6 151,497 + +0.2 151,497 + -0.3 151,497 + -0.8 151,497 + -1.0 151,497 + -1.0 151,497 + -1.1 151,498 - -0.1 151,498 - -0.3 151,498 - +0.2 151,498 - -0.9 151,498 - +0.6 151,509 - -0.6 151,574 - -0.9 151,593 + -0.4 151,594 - -2.3 151,610 + DZA65_RS00655 0.10 -1.1 151,610 + DZA65_RS00655 0.10 +0.8 151,649 + DZA65_RS00655 0.16 -1.4 151,691 + DZA65_RS00655 0.22 -0.8 151,692 - DZA65_RS00655 0.22 -0.6 151,698 - DZA65_RS00655 0.23 +1.2 151,698 - DZA65_RS00655 0.23 -0.5 151,698 - DZA65_RS00655 0.23 -1.8 151,698 - DZA65_RS00655 0.23 +0.2 151,806 - DZA65_RS00655 0.38 -0.0 151,825 + DZA65_RS00655 0.41 -0.8 151,825 + DZA65_RS00655 0.41 +0.4 151,826 - DZA65_RS00655 0.41 +0.0 151,891 - DZA65_RS00655 0.50 -0.0 151,898 + DZA65_RS00655 0.51 +1.0 151,898 + DZA65_RS00655 0.51 -0.7 151,898 + DZA65_RS00655 0.51 +0.3 151,898 + DZA65_RS00655 0.51 +1.6 151,898 + DZA65_RS00655 0.51 -0.0 151,899 - DZA65_RS00655 0.51 -0.8 151,899 - DZA65_RS00655 0.51 -1.3 151,899 - +1.2 151,900 + DZA65_RS00655 0.51 +0.4 151,901 - DZA65_RS00655 0.52 -1.1 151,901 - DZA65_RS00655 0.52 -0.4 151,901 - DZA65_RS00655 0.52 +0.6 152,073 - DZA65_RS00655 0.76 -1.1 152,113 + DZA65_RS00655 0.82 +0.2 152,113 + DZA65_RS00655 0.82 -0.4 152,152 + DZA65_RS00655 0.87 -0.3 152,257 + -1.1 152,258 - +0.5 152,339 + DZA65_RS00660 0.10 -0.5 152,339 + DZA65_RS00660 0.10 -0.1 152,339 + DZA65_RS00660 0.10 +0.6 152,339 + DZA65_RS00660 0.10 -0.9 152,339 + DZA65_RS00660 0.10 -1.6 152,339 + DZA65_RS00660 0.10 +0.4 152,340 - DZA65_RS00660 0.11 +0.6 152,340 - DZA65_RS00660 0.11 -0.1 152,340 - DZA65_RS00660 0.11 -0.1 152,340 - DZA65_RS00660 0.11 -0.8 152,340 - DZA65_RS00660 0.11 -1.1 152,343 + DZA65_RS00660 0.11 -1.0 152,343 + DZA65_RS00660 0.11 +1.2 152,343 + DZA65_RS00660 0.11 -2.0 152,343 + DZA65_RS00660 0.11 -1.2 152,343 + DZA65_RS00660 0.11 +0.7 152,343 + DZA65_RS00660 0.11 +0.0 152,344 - DZA65_RS00660 0.11 -1.3 152,344 - DZA65_RS00660 0.11 -0.7 152,344 - DZA65_RS00660 0.11 -0.7 152,344 - DZA65_RS00660 0.11 -2.7 152,344 - DZA65_RS00660 0.11 +0.8 152,344 - DZA65_RS00660 0.11 +0.5 152,344 - DZA65_RS00660 0.11 -1.0 152,410 - DZA65_RS00660 0.16 -0.7 152,417 + DZA65_RS00660 0.17 -0.7 152,418 - DZA65_RS00660 0.17 +0.2 152,418 - DZA65_RS00660 0.17 +0.4 152,418 - DZA65_RS00660 0.17 +0.0 152,427 + DZA65_RS00660 0.18 +0.5 152,427 + DZA65_RS00660 0.18 -1.1 152,428 - DZA65_RS00660 0.18 +0.4
Or see this region's nucleotide sequence