Strain Fitness in Escherichia coli BL21 around ECD_02901

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02899 and ECD_02900 are separated by 318 nucleotidesECD_02900 and ECD_02901 are separated by 30 nucleotidesECD_02901 and ECD_02902 are separated by 47 nucleotides ECD_02899: ECD_02899 - inner membrane protein, at 3,039,316 to 3,039,648 _02899 ECD_02900: ECD_02900 - NADPH quinone reductase, at 3,039,967 to 3,040,548 _02900 ECD_02901: ECD_02901 - quinol monooxygenase, at 3,040,579 to 3,040,893 _02901 ECD_02902: ECD_02902 - DNA topoisomerase IV, subunit B, at 3,040,941 to 3,042,833 _02902 Position (kb) 3040 3041Strain fitness (log2 ratio) -1 0 1at 3039.929 kb on + strandat 3039.929 kb on + strandat 3039.930 kb on - strandat 3039.932 kb on + strandat 3039.932 kb on + strandat 3039.932 kb on + strandat 3039.932 kb on + strandat 3039.932 kb on + strandat 3039.933 kb on - strandat 3039.934 kb on + strandat 3040.220 kb on + strand, within ECD_02900at 3040.220 kb on + strand, within ECD_02900at 3040.221 kb on - strand, within ECD_02900at 3040.246 kb on + strand, within ECD_02900at 3040.323 kb on + strand, within ECD_02900at 3040.323 kb on + strand, within ECD_02900at 3040.409 kb on - strand, within ECD_02900at 3040.409 kb on - strand, within ECD_02900at 3040.464 kb on + strand, within ECD_02900at 3040.465 kb on - strand, within ECD_02900at 3040.506 kb on + strandat 3040.506 kb on + strandat 3040.507 kb on - strandat 3040.546 kb on + strandat 3040.550 kb on + strandat 3040.550 kb on + strandat 3040.550 kb on + strandat 3040.564 kb on + strandat 3040.654 kb on - strand, within ECD_02901at 3040.756 kb on - strand, within ECD_02901at 3040.828 kb on + strand, within ECD_02901at 3040.828 kb on + strand, within ECD_02901at 3040.841 kb on + strand, within ECD_02901at 3040.873 kb on - strandat 3040.892 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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3,039,929 + +0.0
3,039,929 + +0.0
3,039,930 - -1.1
3,039,932 + +1.1
3,039,932 + +0.5
3,039,932 + -0.1
3,039,932 + +0.3
3,039,932 + +0.2
3,039,933 - +0.2
3,039,934 + -0.1
3,040,220 + ECD_02900 0.43 -0.3
3,040,220 + ECD_02900 0.43 +0.5
3,040,221 - ECD_02900 0.44 -0.1
3,040,246 + ECD_02900 0.48 +0.0
3,040,323 + ECD_02900 0.61 -0.7
3,040,323 + ECD_02900 0.61 -0.4
3,040,409 - ECD_02900 0.76 -0.7
3,040,409 - ECD_02900 0.76 -0.9
3,040,464 + ECD_02900 0.85 +0.1
3,040,465 - ECD_02900 0.86 +0.4
3,040,506 + -0.3
3,040,506 + -0.1
3,040,507 - -1.2
3,040,546 + -0.7
3,040,550 + -0.3
3,040,550 + +0.2
3,040,550 + -0.3
3,040,564 + -0.6
3,040,654 - ECD_02901 0.24 +1.7
3,040,756 - ECD_02901 0.56 +0.3
3,040,828 + ECD_02901 0.79 +0.5
3,040,828 + ECD_02901 0.79 -0.3
3,040,841 + ECD_02901 0.83 +0.2
3,040,873 - +0.1
3,040,892 - +0.1

Or see this region's nucleotide sequence