Strain Fitness in Escherichia coli BL21 around ECD_01810

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01809 and ECD_01810 are separated by 394 nucleotidesECD_01810 and ECD_01811 are separated by 12 nucleotidesECD_01811 and ECD_01812 are separated by 3 nucleotides ECD_01809: ECD_01809 - serine/threonine-specific protein phosphatase 1, at 1,868,038 to 1,868,694 _01809 ECD_01810: ECD_01810 - DUF2511 family protein, at 1,869,089 to 1,869,430 _01810 ECD_01811: ECD_01811 - inner membrane protein, at 1,869,443 to 1,870,315 _01811 ECD_01812: ECD_01812 - CopC family protein, at 1,870,319 to 1,870,693 _01812 Position (kb) 1869 1870Strain fitness (log2 ratio) -2 -1 0 1at 1868.788 kb on + strandat 1868.788 kb on + strandat 1868.821 kb on + strandat 1868.942 kb on + strandat 1869.267 kb on + strand, within ECD_01810at 1869.268 kb on - strand, within ECD_01810at 1869.399 kb on - strandat 1869.498 kb on - strandat 1869.580 kb on - strand, within ECD_01811at 1869.605 kb on + strand, within ECD_01811at 1869.608 kb on - strand, within ECD_01811at 1869.803 kb on - strand, within ECD_01811at 1869.869 kb on - strand, within ECD_01811at 1869.956 kb on - strand, within ECD_01811at 1870.089 kb on - strand, within ECD_01811at 1870.089 kb on - strand, within ECD_01811at 1870.320 kb on + strandat 1870.393 kb on - strand, within ECD_01812

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,868,788 + -0.3
1,868,788 + -1.1
1,868,821 + +0.3
1,868,942 + +0.6
1,869,267 + ECD_01810 0.52 -0.0
1,869,268 - ECD_01810 0.52 -0.9
1,869,399 - -0.3
1,869,498 - -0.1
1,869,580 - ECD_01811 0.16 +0.6
1,869,605 + ECD_01811 0.19 +0.4
1,869,608 - ECD_01811 0.19 -0.2
1,869,803 - ECD_01811 0.41 -1.5
1,869,869 - ECD_01811 0.49 -0.1
1,869,956 - ECD_01811 0.59 -1.8
1,870,089 - ECD_01811 0.74 +0.3
1,870,089 - ECD_01811 0.74 -0.2
1,870,320 + +0.3
1,870,393 - ECD_01812 0.20 -0.5

Or see this region's nucleotide sequence