Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00291 and ECD_00292 are separated by 336 nucleotides ECD_00292 and ECD_00293 are separated by 108 nucleotides ECD_00293 and ECD_00294 are separated by 30 nucleotides
ECD_00291: ECD_00291 - cytosine/isoguanine deaminase, at 325,706 to 326,989
_00291
ECD_00292: ECD_00292 - transcriptional activator of cyn operon; autorepressor, at 327,326 to 328,225
_00292
ECD_00293: ECD_00293 - carbonic anhydrase, at 328,334 to 328,993
_00293
ECD_00294: ECD_00294 - cyanate aminohydrolase, at 329,024 to 329,494
_00294
Position (kb) 327
328
329 Strain fitness (log2 ratio) -2
-1
0
1 at 326.466 kb on - strand, within ECD_00291 at 326.477 kb on + strand, within ECD_00291 at 326.478 kb on - strand, within ECD_00291 at 326.478 kb on - strand, within ECD_00291 at 326.479 kb on + strand, within ECD_00291 at 326.479 kb on + strand, within ECD_00291 at 326.747 kb on - strand, within ECD_00291 at 326.949 kb on + strand at 326.950 kb on - strand at 327.011 kb on + strand at 327.071 kb on - strand at 327.212 kb on - strand at 327.255 kb on - strand at 327.467 kb on - strand, within ECD_00292 at 327.587 kb on + strand, within ECD_00292 at 327.726 kb on - strand, within ECD_00292 at 327.923 kb on - strand, within ECD_00292 at 328.027 kb on - strand, within ECD_00292 at 328.097 kb on + strand, within ECD_00292 at 328.110 kb on - strand, within ECD_00292 at 328.295 kb on + strand at 328.295 kb on + strand at 328.295 kb on + strand at 328.345 kb on + strand at 328.346 kb on - strand at 328.361 kb on - strand at 328.402 kb on + strand, within ECD_00293 at 328.581 kb on - strand, within ECD_00293 at 328.678 kb on + strand, within ECD_00293 at 328.678 kb on + strand, within ECD_00293 at 328.679 kb on - strand, within ECD_00293 at 328.780 kb on - strand, within ECD_00293 at 328.807 kb on + strand, within ECD_00293 at 328.878 kb on - strand, within ECD_00293 at 328.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 326,466 - ECD_00291 0.59 +0.1 326,477 + ECD_00291 0.60 -1.2 326,478 - ECD_00291 0.60 +0.1 326,478 - ECD_00291 0.60 -0.0 326,479 + ECD_00291 0.60 -0.2 326,479 + ECD_00291 0.60 +0.2 326,747 - ECD_00291 0.81 +0.2 326,949 + +0.6 326,950 - +0.4 327,011 + +1.4 327,071 - -0.2 327,212 - +0.7 327,255 - +0.4 327,467 - ECD_00292 0.16 -0.1 327,587 + ECD_00292 0.29 -0.5 327,726 - ECD_00292 0.44 +0.1 327,923 - ECD_00292 0.66 +0.0 328,027 - ECD_00292 0.78 +0.2 328,097 + ECD_00292 0.86 -0.0 328,110 - ECD_00292 0.87 -1.8 328,295 + -0.2 328,295 + +0.0 328,295 + -0.1 328,345 + +0.3 328,346 - +0.7 328,361 - -0.1 328,402 + ECD_00293 0.10 -0.6 328,581 - ECD_00293 0.37 +0.5 328,678 + ECD_00293 0.52 +1.3 328,678 + ECD_00293 0.52 +0.6 328,679 - ECD_00293 0.52 +0.7 328,780 - ECD_00293 0.68 +0.1 328,807 + ECD_00293 0.72 -1.3 328,878 - ECD_00293 0.82 +0.0 328,998 - +1.4
Or see this region's nucleotide sequence