Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00782 and ECD_00783 are separated by 73 nucleotides ECD_00783 and ECD_04299 overlap by 72 nucleotides ECD_04299 and ECD_00784 are separated by 185 nucleotides ECD_00784 and ECD_00785 overlap by 4 nucleotides
ECD_00782: ECD_00782 - OPG biosynthetic transmembrane phosphoethanolamine transferase, at 835,006 to 836,589
_00782
ECD_00783: ECD_00783 - hypothetical protein, at 836,663 to 836,932
_00783
ECD_04299: ECD_04299 - Mn(2)-response protein, MntR-repressed, at 836,861 to 836,989
_04299
ECD_00784: ECD_00784 - Mn(2+)-responsive manganese regulon transcriptional regulator, at 837,175 to 837,642
_00784
ECD_00785: ECD_00785 - putative transporter, at 837,639 to 838,757
_00785
Position (kb) 836
837 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 835.934 kb on + strand, within ECD_00782 at 835.935 kb on - strand, within ECD_00782 at 835.935 kb on - strand, within ECD_00782 at 836.590 kb on - strand at 836.602 kb on + strand at 836.696 kb on + strand, within ECD_00783 at 836.697 kb on - strand, within ECD_00783 at 836.697 kb on - strand, within ECD_00783 at 836.697 kb on - strand, within ECD_00783 at 836.716 kb on + strand, within ECD_00783 at 836.867 kb on - strand at 836.918 kb on - strand at 836.918 kb on - strand at 836.918 kb on - strand at 836.942 kb on - strand, within ECD_04299 at 836.957 kb on - strand, within ECD_04299 at 836.969 kb on - strand, within ECD_04299 at 836.969 kb on - strand, within ECD_04299 at 836.990 kb on - strand at 837.008 kb on - strand at 837.040 kb on - strand at 837.040 kb on - strand at 837.044 kb on - strand at 837.050 kb on - strand at 837.052 kb on - strand at 837.075 kb on - strand at 837.144 kb on + strand at 837.144 kb on + strand at 837.148 kb on + strand at 837.148 kb on + strand at 837.148 kb on + strand at 837.149 kb on - strand at 837.149 kb on - strand at 837.149 kb on - strand at 837.160 kb on + strand at 837.160 kb on + strand at 837.161 kb on - strand at 837.296 kb on - strand, within ECD_00784 at 837.891 kb on - strand, within ECD_00785 at 837.947 kb on + strand, within ECD_00785 at 837.966 kb on - strand, within ECD_00785
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 835,934 + ECD_00782 0.59 +0.6 835,935 - ECD_00782 0.59 -0.2 835,935 - ECD_00782 0.59 +0.2 836,590 - +0.5 836,602 + -1.6 836,696 + ECD_00783 0.12 -1.1 836,697 - ECD_00783 0.13 -0.1 836,697 - ECD_00783 0.13 +0.1 836,697 - ECD_00783 0.13 +0.4 836,716 + ECD_00783 0.20 +0.6 836,867 - +0.0 836,918 - -3.4 836,918 - -2.3 836,918 - -3.1 836,942 - ECD_04299 0.63 -5.0 836,957 - ECD_04299 0.74 -4.4 836,969 - ECD_04299 0.84 -4.5 836,969 - ECD_04299 0.84 -2.6 836,990 - -2.0 837,008 - +0.4 837,040 - +0.1 837,040 - -0.0 837,044 - +0.8 837,050 - +0.2 837,052 - +0.3 837,075 - +0.5 837,144 + +0.7 837,144 + -0.0 837,148 + +1.0 837,148 + +1.3 837,148 + +0.6 837,149 - +0.0 837,149 - +0.8 837,149 - +1.7 837,160 + -0.6 837,160 + +0.1 837,161 - +0.3 837,296 - ECD_00784 0.26 -0.5 837,891 - ECD_00785 0.23 -0.1 837,947 + ECD_00785 0.28 -0.2 837,966 - ECD_00785 0.29 +0.3
Or see this region's nucleotide sequence