Strain Fitness in Escherichia coli BL21 around ECD_03037

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03036 and ECD_03037 are separated by 27 nucleotidesECD_03037 and ECD_t00057 are separated by 206 nucleotidesECD_t00057 and ECD_03038 are separated by 347 nucleotides ECD_03036: ECD_03036 - transcription termination/antitermination L factor, at 3,184,538 to 3,186,025 _03036 ECD_03037: ECD_03037 - ribosome maturation factor for 30S subunits, at 3,186,053 to 3,186,505 _03037 ECD_t00057: ECD_t00057 - tRNA-Met, at 3,186,712 to 3,186,788 _t00057 ECD_03038: ECD_03038 - argininosuccinate synthetase, at 3,187,136 to 3,188,479 _03038 Position (kb) 3186 3187Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3186.125 kb on - strand, within ECD_03037at 3186.290 kb on - strand, within ECD_03037at 3186.292 kb on - strand, within ECD_03037at 3186.292 kb on - strand, within ECD_03037at 3186.292 kb on - strand, within ECD_03037at 3186.333 kb on - strand, within ECD_03037at 3186.333 kb on - strand, within ECD_03037at 3186.333 kb on - strand, within ECD_03037at 3186.391 kb on - strand, within ECD_03037at 3186.391 kb on - strand, within ECD_03037at 3186.391 kb on - strand, within ECD_03037at 3186.470 kb on - strandat 3186.470 kb on - strandat 3186.523 kb on - strandat 3186.547 kb on - strandat 3186.591 kb on - strandat 3186.661 kb on - strandat 3186.684 kb on - strandat 3186.809 kb on - strandat 3186.853 kb on - strandat 3186.883 kb on + strandat 3186.883 kb on + strandat 3186.883 kb on + strandat 3186.885 kb on + strandat 3186.886 kb on - strandat 3186.964 kb on - strandat 3187.118 kb on + strandat 3187.118 kb on + strandat 3187.174 kb on + strandat 3187.256 kb on + strandat 3187.256 kb on + strandat 3187.256 kb on + strandat 3187.256 kb on + strandat 3187.256 kb on + strandat 3187.257 kb on - strandat 3187.257 kb on - strandat 3187.258 kb on + strandat 3187.258 kb on + strandat 3187.293 kb on - strand, within ECD_03038at 3187.378 kb on + strand, within ECD_03038at 3187.408 kb on + strand, within ECD_03038at 3187.430 kb on + strand, within ECD_03038at 3187.431 kb on - strand, within ECD_03038

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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3,186,125 - ECD_03037 0.16 -2.1
3,186,290 - ECD_03037 0.52 -2.1
3,186,292 - ECD_03037 0.53 +1.8
3,186,292 - ECD_03037 0.53 +0.5
3,186,292 - ECD_03037 0.53 +1.4
3,186,333 - ECD_03037 0.62 +1.9
3,186,333 - ECD_03037 0.62 +0.5
3,186,333 - ECD_03037 0.62 +1.1
3,186,391 - ECD_03037 0.75 +2.1
3,186,391 - ECD_03037 0.75 +1.4
3,186,391 - ECD_03037 0.75 +0.4
3,186,470 - +0.5
3,186,470 - +1.5
3,186,523 - +0.4
3,186,547 - +0.4
3,186,591 - +0.2
3,186,661 - -0.5
3,186,684 - +1.0
3,186,809 - +0.8
3,186,853 - +0.3
3,186,883 + +0.1
3,186,883 + -0.1
3,186,883 + +1.5
3,186,885 + +0.2
3,186,886 - +0.6
3,186,964 - +0.7
3,187,118 + +0.6
3,187,118 + -1.5
3,187,174 + -1.7
3,187,256 + -4.2
3,187,256 + -3.3
3,187,256 + -2.3
3,187,256 + -3.5
3,187,256 + -4.7
3,187,257 - -3.6
3,187,257 - -5.2
3,187,258 + -2.3
3,187,258 + -3.4
3,187,293 - ECD_03038 0.12 -4.4
3,187,378 + ECD_03038 0.18 -4.6
3,187,408 + ECD_03038 0.20 -4.0
3,187,430 + ECD_03038 0.22 -4.5
3,187,431 - ECD_03038 0.22 -5.2

Or see this region's nucleotide sequence