Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03036 and ECD_03037 are separated by 27 nucleotides ECD_03037 and ECD_t00057 are separated by 206 nucleotides ECD_t00057 and ECD_03038 are separated by 347 nucleotides
ECD_03036: ECD_03036 - transcription termination/antitermination L factor, at 3,184,538 to 3,186,025
_03036
ECD_03037: ECD_03037 - ribosome maturation factor for 30S subunits, at 3,186,053 to 3,186,505
_03037
ECD_t00057: ECD_t00057 - tRNA-Met, at 3,186,712 to 3,186,788
_t00057
ECD_03038: ECD_03038 - argininosuccinate synthetase, at 3,187,136 to 3,188,479
_03038
Position (kb)
3186
3187 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3186.125 kb on - strand, within ECD_03037 at 3186.290 kb on - strand, within ECD_03037 at 3186.292 kb on - strand, within ECD_03037 at 3186.292 kb on - strand, within ECD_03037 at 3186.292 kb on - strand, within ECD_03037 at 3186.333 kb on - strand, within ECD_03037 at 3186.333 kb on - strand, within ECD_03037 at 3186.333 kb on - strand, within ECD_03037 at 3186.391 kb on - strand, within ECD_03037 at 3186.391 kb on - strand, within ECD_03037 at 3186.391 kb on - strand, within ECD_03037 at 3186.470 kb on - strand at 3186.470 kb on - strand at 3186.523 kb on - strand at 3186.547 kb on - strand at 3186.591 kb on - strand at 3186.661 kb on - strand at 3186.684 kb on - strand at 3186.809 kb on - strand at 3186.853 kb on - strand at 3186.883 kb on + strand at 3186.883 kb on + strand at 3186.883 kb on + strand at 3186.885 kb on + strand at 3186.886 kb on - strand at 3186.964 kb on - strand at 3187.118 kb on + strand at 3187.118 kb on + strand at 3187.174 kb on + strand at 3187.256 kb on + strand at 3187.256 kb on + strand at 3187.256 kb on + strand at 3187.256 kb on + strand at 3187.256 kb on + strand at 3187.257 kb on - strand at 3187.257 kb on - strand at 3187.258 kb on + strand at 3187.258 kb on + strand at 3187.293 kb on - strand, within ECD_03038 at 3187.378 kb on + strand, within ECD_03038 at 3187.408 kb on + strand, within ECD_03038 at 3187.430 kb on + strand, within ECD_03038 at 3187.431 kb on - strand, within ECD_03038
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 3,186,125 - ECD_03037 0.16 -2.1 3,186,290 - ECD_03037 0.52 -2.1 3,186,292 - ECD_03037 0.53 +1.8 3,186,292 - ECD_03037 0.53 +0.5 3,186,292 - ECD_03037 0.53 +1.4 3,186,333 - ECD_03037 0.62 +1.9 3,186,333 - ECD_03037 0.62 +0.5 3,186,333 - ECD_03037 0.62 +1.1 3,186,391 - ECD_03037 0.75 +2.1 3,186,391 - ECD_03037 0.75 +1.4 3,186,391 - ECD_03037 0.75 +0.4 3,186,470 - +0.5 3,186,470 - +1.5 3,186,523 - +0.4 3,186,547 - +0.4 3,186,591 - +0.2 3,186,661 - -0.5 3,186,684 - +1.0 3,186,809 - +0.8 3,186,853 - +0.3 3,186,883 + +0.1 3,186,883 + -0.1 3,186,883 + +1.5 3,186,885 + +0.2 3,186,886 - +0.6 3,186,964 - +0.7 3,187,118 + +0.6 3,187,118 + -1.5 3,187,174 + -1.7 3,187,256 + -4.2 3,187,256 + -3.3 3,187,256 + -2.3 3,187,256 + -3.5 3,187,256 + -4.7 3,187,257 - -3.6 3,187,257 - -5.2 3,187,258 + -2.3 3,187,258 + -3.4 3,187,293 - ECD_03038 0.12 -4.4 3,187,378 + ECD_03038 0.18 -4.6 3,187,408 + ECD_03038 0.20 -4.0 3,187,430 + ECD_03038 0.22 -4.5 3,187,431 - ECD_03038 0.22 -5.2
Or see this region's nucleotide sequence