Strain Fitness in Escherichia coli BL21 around ECD_02918

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02916 and ECD_02917 are separated by 15 nucleotidesECD_02917 and ECD_02918 are separated by 1 nucleotidesECD_02918 and ECD_02919 are separated by 42 nucleotidesECD_02919 and ECD_02920 are separated by 268 nucleotides ECD_02916: ECD_02916 - putative outer membrane usher protein, at 3,053,498 to 3,055,966 _02916 ECD_02917: ECD_02917 - putative periplasmic pilin chaperone, at 3,055,982 to 3,056,731 _02917 ECD_02918: ECD_02918 - fimbrial protein, at 3,056,733 to 3,057,797 _02918 ECD_02919: ECD_02919 - motility and biofilm regulator, at 3,057,840 to 3,058,040 _02919 ECD_02920: ECD_02920 - DUF1449 family inner membrane protein, at 3,058,309 to 3,058,938 _02920 Position (kb) 3056 3057 3058Strain fitness (log2 ratio) -1 0 1at 3055.780 kb on - strandat 3055.835 kb on + strandat 3056.523 kb on - strand, within ECD_02917at 3057.038 kb on + strand, within ECD_02918at 3057.088 kb on + strand, within ECD_02918at 3057.119 kb on - strand, within ECD_02918at 3057.773 kb on - strandat 3057.795 kb on + strandat 3057.795 kb on + strandat 3057.806 kb on - strandat 3057.814 kb on + strandat 3057.838 kb on + strandat 3057.917 kb on + strand, within ECD_02919at 3058.014 kb on - strand, within ECD_02919at 3058.140 kb on - strandat 3058.144 kb on - strandat 3058.453 kb on - strand, within ECD_02920at 3058.632 kb on - strand, within ECD_02920at 3058.657 kb on + strand, within ECD_02920at 3058.723 kb on + strand, within ECD_02920at 3058.725 kb on + strand, within ECD_02920

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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3,055,780 - +0.8
3,055,835 + +1.4
3,056,523 - ECD_02917 0.72 +0.2
3,057,038 + ECD_02918 0.29 -1.0
3,057,088 + ECD_02918 0.33 -1.0
3,057,119 - ECD_02918 0.36 -0.4
3,057,773 - +0.2
3,057,795 + +0.3
3,057,795 + +0.0
3,057,806 - +0.3
3,057,814 + +0.1
3,057,838 + +0.4
3,057,917 + ECD_02919 0.38 +0.7
3,058,014 - ECD_02919 0.87 +0.9
3,058,140 - -1.0
3,058,144 - +0.4
3,058,453 - ECD_02920 0.23 +0.3
3,058,632 - ECD_02920 0.51 +0.9
3,058,657 + ECD_02920 0.55 -1.2
3,058,723 + ECD_02920 0.66 -1.4
3,058,725 + ECD_02920 0.66 -1.5

Or see this region's nucleotide sequence