Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02172 and ECD_02173 are separated by 56 nucleotides ECD_02173 and ECD_02174 are separated by 14 nucleotides
ECD_02172: ECD_02172 - putative L-rhamnonate transporter, at 2,249,037 to 2,250,326
_02172
ECD_02173: ECD_02173 - L-rhamnonate dehydratase, at 2,250,383 to 2,251,588
_02173
ECD_02174: ECD_02174 - putative DNA-binding transcriptional regulator for the rhm operon, at 2,251,603 to 2,252,385
_02174
Position (kb)
2250
2251
2252 Strain fitness (log2 ratio)
-2
-1
0
1 at 2249.599 kb on - strand, within ECD_02172 at 2249.599 kb on - strand, within ECD_02172 at 2249.891 kb on - strand, within ECD_02172 at 2249.891 kb on - strand, within ECD_02172 at 2250.072 kb on - strand, within ECD_02172 at 2250.138 kb on + strand, within ECD_02172 at 2250.139 kb on - strand, within ECD_02172 at 2250.343 kb on + strand at 2250.344 kb on - strand at 2250.394 kb on - strand at 2250.823 kb on - strand, within ECD_02173 at 2250.864 kb on + strand, within ECD_02173 at 2250.898 kb on - strand, within ECD_02173 at 2251.225 kb on - strand, within ECD_02173 at 2251.227 kb on + strand, within ECD_02173 at 2251.688 kb on + strand, within ECD_02174 at 2251.800 kb on - strand, within ECD_02174 at 2251.818 kb on - strand, within ECD_02174 at 2251.818 kb on - strand, within ECD_02174 at 2252.087 kb on - strand, within ECD_02174 at 2252.259 kb on - strand, within ECD_02174 at 2252.401 kb on + strand at 2252.402 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 2,249,599 - ECD_02172 0.44 +0.1 2,249,599 - ECD_02172 0.44 +0.0 2,249,891 - ECD_02172 0.66 +0.9 2,249,891 - ECD_02172 0.66 +0.2 2,250,072 - ECD_02172 0.80 +1.1 2,250,138 + ECD_02172 0.85 -1.4 2,250,139 - ECD_02172 0.85 +0.2 2,250,343 + +0.6 2,250,344 - +1.2 2,250,394 - +0.4 2,250,823 - ECD_02173 0.36 +0.6 2,250,864 + ECD_02173 0.40 -2.3 2,250,898 - ECD_02173 0.43 -0.1 2,251,225 - ECD_02173 0.70 +0.2 2,251,227 + ECD_02173 0.70 +0.1 2,251,688 + ECD_02174 0.11 +0.7 2,251,800 - ECD_02174 0.25 +0.8 2,251,818 - ECD_02174 0.27 +0.1 2,251,818 - ECD_02174 0.27 +1.2 2,252,087 - ECD_02174 0.62 +0.9 2,252,259 - ECD_02174 0.84 +1.3 2,252,401 + +0.8 2,252,402 - +0.2
Or see this region's nucleotide sequence