Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01921 and ECD_01922 are separated by 5 nucleotides ECD_01922 and ECD_01923 overlap by 4 nucleotides
ECD_01921: ECD_01921 - ATP phosphoribosyltransferase, at 1,985,995 to 1,986,894
_01921
ECD_01922: ECD_01922 - bifunctional histidinal dehydrogenase/ histidinol dehydrogenase, at 1,986,900 to 1,988,204
_01922
ECD_01923: ECD_01923 - histidinol-phosphate aminotransferase, at 1,988,201 to 1,989,271
_01923
Position (kb)
1986
1987
1988
1989 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1986.065 kb on + strand at 1986.085 kb on - strand, within ECD_01921 at 1986.556 kb on - strand, within ECD_01921 at 1986.609 kb on + strand, within ECD_01921 at 1986.676 kb on + strand, within ECD_01921 at 1986.929 kb on + strand at 1987.225 kb on + strand, within ECD_01922 at 1987.287 kb on + strand, within ECD_01922 at 1987.590 kb on + strand, within ECD_01922 at 1987.829 kb on + strand, within ECD_01922 at 1988.316 kb on - strand, within ECD_01923 at 1988.399 kb on + strand, within ECD_01923 at 1988.409 kb on - strand, within ECD_01923 at 1988.418 kb on + strand, within ECD_01923 at 1988.537 kb on + strand, within ECD_01923 at 1988.538 kb on - strand, within ECD_01923 at 1989.113 kb on - strand, within ECD_01923 at 1989.133 kb on + strand, within ECD_01923
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 1,986,065 + -3.6 1,986,085 - ECD_01921 0.10 -1.8 1,986,556 - ECD_01921 0.62 -0.0 1,986,609 + ECD_01921 0.68 -3.5 1,986,676 + ECD_01921 0.76 +1.3 1,986,929 + -1.8 1,987,225 + ECD_01922 0.25 -1.4 1,987,287 + ECD_01922 0.30 -2.7 1,987,590 + ECD_01922 0.53 -2.5 1,987,829 + ECD_01922 0.71 -4.4 1,988,316 - ECD_01923 0.11 -4.5 1,988,399 + ECD_01923 0.18 -2.4 1,988,409 - ECD_01923 0.19 -4.7 1,988,418 + ECD_01923 0.20 -4.1 1,988,537 + ECD_01923 0.31 -2.6 1,988,538 - ECD_01923 0.31 -2.0 1,989,113 - ECD_01923 0.85 -4.1 1,989,133 + ECD_01923 0.87 -6.1
Or see this region's nucleotide sequence