Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01232 and ECD_01233 are separated by 85 nucleotides ECD_01233 and ECD_01234 are separated by 380 nucleotides ECD_01234 and ECD_01235 overlap by 1 nucleotides
ECD_01232: ECD_01232 - putative rubrerythrin/ferritin-like metal-binding protein, at 1,300,862 to 1,301,362
_01232
ECD_01233: ECD_01233 - KGG family protein, at 1,301,448 to 1,301,627
_01233
ECD_01234: ECD_01234 - tryptophan synthase, alpha subunit, at 1,302,008 to 1,302,814
_01234
ECD_01235: ECD_01235 - tryptophan synthase, beta subunit, at 1,302,814 to 1,304,007
_01235
Position (kb) 1302
1303 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1302.082 kb on + strand at 1302.511 kb on - strand, within ECD_01234 at 1302.661 kb on + strand, within ECD_01234 at 1303.449 kb on + strand, within ECD_01235 at 1303.451 kb on + strand, within ECD_01235 at 1303.452 kb on - strand, within ECD_01235 at 1303.611 kb on - strand, within ECD_01235 at 1303.611 kb on - strand, within ECD_01235 at 1303.788 kb on - strand, within ECD_01235 at 1303.813 kb on - strand, within ECD_01235
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 1,302,082 + -2.1 1,302,511 - ECD_01234 0.62 -3.6 1,302,661 + ECD_01234 0.81 -3.1 1,303,449 + ECD_01235 0.53 -2.6 1,303,451 + ECD_01235 0.53 -2.4 1,303,452 - ECD_01235 0.53 -3.6 1,303,611 - ECD_01235 0.67 -4.5 1,303,611 - ECD_01235 0.67 -1.8 1,303,788 - ECD_01235 0.82 -3.6 1,303,813 - ECD_01235 0.84 -2.1
Or see this region's nucleotide sequence