Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01201 and ECD_01202 are separated by 515 nucleotides ECD_01202 and ECD_01203 overlap by 4 nucleotides
ECD_01201: ECD_01201 - nitrate/nitrite transporter, at 1,266,105 to 1,267,496
_01201
ECD_01202: ECD_01202 - nitrate reductase 1, alpha subunit, at 1,268,012 to 1,271,755
_01202
ECD_01203: ECD_01203 - nitrate reductase 1, beta (Fe-S) subunit, at 1,271,752 to 1,273,290
_01203
Position (kb)
1268
1269
1270
1271
1272 Strain fitness (log2 ratio)
-1
0
1
2 at 1267.471 kb on + strand at 1267.737 kb on - strand at 1267.954 kb on + strand at 1268.426 kb on - strand, within ECD_01202 at 1268.627 kb on + strand, within ECD_01202 at 1268.628 kb on - strand, within ECD_01202 at 1268.744 kb on + strand, within ECD_01202 at 1268.949 kb on + strand, within ECD_01202 at 1268.999 kb on + strand, within ECD_01202 at 1268.999 kb on + strand, within ECD_01202 at 1268.999 kb on + strand, within ECD_01202 at 1269.434 kb on + strand, within ECD_01202 at 1269.455 kb on + strand, within ECD_01202 at 1269.656 kb on + strand, within ECD_01202 at 1269.674 kb on + strand, within ECD_01202 at 1269.743 kb on + strand, within ECD_01202 at 1269.747 kb on + strand, within ECD_01202 at 1269.747 kb on + strand, within ECD_01202 at 1270.058 kb on + strand, within ECD_01202 at 1270.700 kb on + strand, within ECD_01202 at 1270.808 kb on + strand, within ECD_01202 at 1271.123 kb on - strand, within ECD_01202 at 1271.147 kb on + strand, within ECD_01202 at 1271.315 kb on + strand, within ECD_01202 at 1271.682 kb on + strand at 1271.683 kb on - strand at 1271.748 kb on + strand at 1271.748 kb on + strand at 1271.829 kb on + strand at 1272.256 kb on + strand, within ECD_01203 at 1272.256 kb on + strand, within ECD_01203 at 1272.286 kb on + strand, within ECD_01203 at 1272.287 kb on - strand, within ECD_01203 at 1272.501 kb on + strand, within ECD_01203 at 1272.549 kb on + strand, within ECD_01203 at 1272.744 kb on + strand, within ECD_01203
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 1,267,471 + -0.8 1,267,737 - +0.3 1,267,954 + -0.2 1,268,426 - ECD_01202 0.11 -0.8 1,268,627 + ECD_01202 0.16 +0.1 1,268,628 - ECD_01202 0.16 +0.8 1,268,744 + ECD_01202 0.20 +0.8 1,268,949 + ECD_01202 0.25 -0.7 1,268,999 + ECD_01202 0.26 +0.9 1,268,999 + ECD_01202 0.26 +1.9 1,268,999 + ECD_01202 0.26 -0.8 1,269,434 + ECD_01202 0.38 -0.3 1,269,455 + ECD_01202 0.39 -0.1 1,269,656 + ECD_01202 0.44 +0.8 1,269,674 + ECD_01202 0.44 -0.2 1,269,743 + ECD_01202 0.46 +2.2 1,269,747 + ECD_01202 0.46 -0.1 1,269,747 + ECD_01202 0.46 -0.5 1,270,058 + ECD_01202 0.55 -0.3 1,270,700 + ECD_01202 0.72 -0.9 1,270,808 + ECD_01202 0.75 +0.6 1,271,123 - ECD_01202 0.83 +0.8 1,271,147 + ECD_01202 0.84 +0.4 1,271,315 + ECD_01202 0.88 +0.3 1,271,682 + +0.3 1,271,683 - +1.0 1,271,748 + -0.7 1,271,748 + -0.6 1,271,829 + -0.4 1,272,256 + ECD_01203 0.33 +0.1 1,272,256 + ECD_01203 0.33 -0.1 1,272,286 + ECD_01203 0.35 -0.2 1,272,287 - ECD_01203 0.35 +0.4 1,272,501 + ECD_01203 0.49 -0.2 1,272,549 + ECD_01203 0.52 -0.4 1,272,744 + ECD_01203 0.64 +0.1
Or see this region's nucleotide sequence