Strain Fitness in Escherichia coli BL21 around ECD_01202

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01201 and ECD_01202 are separated by 515 nucleotidesECD_01202 and ECD_01203 overlap by 4 nucleotides ECD_01201: ECD_01201 - nitrate/nitrite transporter, at 1,266,105 to 1,267,496 _01201 ECD_01202: ECD_01202 - nitrate reductase 1, alpha subunit, at 1,268,012 to 1,271,755 _01202 ECD_01203: ECD_01203 - nitrate reductase 1, beta (Fe-S) subunit, at 1,271,752 to 1,273,290 _01203 Position (kb) 1268 1269 1270 1271 1272Strain fitness (log2 ratio) -1 0 1 2at 1267.471 kb on + strandat 1267.737 kb on - strandat 1267.954 kb on + strandat 1268.426 kb on - strand, within ECD_01202at 1268.627 kb on + strand, within ECD_01202at 1268.628 kb on - strand, within ECD_01202at 1268.744 kb on + strand, within ECD_01202at 1268.949 kb on + strand, within ECD_01202at 1268.999 kb on + strand, within ECD_01202at 1268.999 kb on + strand, within ECD_01202at 1268.999 kb on + strand, within ECD_01202at 1269.434 kb on + strand, within ECD_01202at 1269.455 kb on + strand, within ECD_01202at 1269.656 kb on + strand, within ECD_01202at 1269.674 kb on + strand, within ECD_01202at 1269.743 kb on + strand, within ECD_01202at 1269.747 kb on + strand, within ECD_01202at 1269.747 kb on + strand, within ECD_01202at 1270.058 kb on + strand, within ECD_01202at 1270.700 kb on + strand, within ECD_01202at 1270.808 kb on + strand, within ECD_01202at 1271.123 kb on - strand, within ECD_01202at 1271.147 kb on + strand, within ECD_01202at 1271.315 kb on + strand, within ECD_01202at 1271.682 kb on + strandat 1271.683 kb on - strandat 1271.748 kb on + strandat 1271.748 kb on + strandat 1271.829 kb on + strandat 1272.256 kb on + strand, within ECD_01203at 1272.256 kb on + strand, within ECD_01203at 1272.286 kb on + strand, within ECD_01203at 1272.287 kb on - strand, within ECD_01203at 1272.501 kb on + strand, within ECD_01203at 1272.549 kb on + strand, within ECD_01203at 1272.744 kb on + strand, within ECD_01203

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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1,267,471 + -0.8
1,267,737 - +0.3
1,267,954 + -0.2
1,268,426 - ECD_01202 0.11 -0.8
1,268,627 + ECD_01202 0.16 +0.1
1,268,628 - ECD_01202 0.16 +0.8
1,268,744 + ECD_01202 0.20 +0.8
1,268,949 + ECD_01202 0.25 -0.7
1,268,999 + ECD_01202 0.26 +0.9
1,268,999 + ECD_01202 0.26 +1.9
1,268,999 + ECD_01202 0.26 -0.8
1,269,434 + ECD_01202 0.38 -0.3
1,269,455 + ECD_01202 0.39 -0.1
1,269,656 + ECD_01202 0.44 +0.8
1,269,674 + ECD_01202 0.44 -0.2
1,269,743 + ECD_01202 0.46 +2.2
1,269,747 + ECD_01202 0.46 -0.1
1,269,747 + ECD_01202 0.46 -0.5
1,270,058 + ECD_01202 0.55 -0.3
1,270,700 + ECD_01202 0.72 -0.9
1,270,808 + ECD_01202 0.75 +0.6
1,271,123 - ECD_01202 0.83 +0.8
1,271,147 + ECD_01202 0.84 +0.4
1,271,315 + ECD_01202 0.88 +0.3
1,271,682 + +0.3
1,271,683 - +1.0
1,271,748 + -0.7
1,271,748 + -0.6
1,271,829 + -0.4
1,272,256 + ECD_01203 0.33 +0.1
1,272,256 + ECD_01203 0.33 -0.1
1,272,286 + ECD_01203 0.35 -0.2
1,272,287 - ECD_01203 0.35 +0.4
1,272,501 + ECD_01203 0.49 -0.2
1,272,549 + ECD_01203 0.52 -0.4
1,272,744 + ECD_01203 0.64 +0.1

Or see this region's nucleotide sequence