Strain Fitness in Escherichia coli BL21 around ECD_00669

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00668 and ECD_00669 are separated by 38 nucleotidesECD_00669 and ECD_00670 are separated by 270 nucleotides ECD_00668: ECD_00668 - deoxyribodipyrimidine photolyase, FAD-binding, at 698,179 to 699,600 _00668 ECD_00669: ECD_00669 - dipeptide and tripeptide permease D, at 699,639 to 701,120 _00669 ECD_00670: ECD_00670 - NIF3 family metal-binding protein, at 701,391 to 702,134 _00670 Position (kb) 699 700 701 702Strain fitness (log2 ratio) -2 -1 0 1at 698.640 kb on + strand, within ECD_00668at 698.640 kb on + strand, within ECD_00668at 698.739 kb on + strand, within ECD_00668at 698.846 kb on - strand, within ECD_00668at 698.997 kb on + strand, within ECD_00668at 698.998 kb on - strand, within ECD_00668at 699.040 kb on + strand, within ECD_00668at 699.041 kb on - strand, within ECD_00668at 699.041 kb on - strand, within ECD_00668at 699.041 kb on - strand, within ECD_00668at 699.571 kb on + strandat 699.618 kb on - strandat 699.748 kb on - strandat 699.755 kb on + strandat 699.755 kb on + strandat 699.756 kb on - strandat 699.756 kb on - strandat 699.758 kb on - strandat 699.772 kb on + strandat 699.773 kb on - strandat 699.838 kb on + strand, within ECD_00669at 699.976 kb on - strand, within ECD_00669at 699.978 kb on + strand, within ECD_00669at 700.006 kb on + strand, within ECD_00669at 700.006 kb on + strand, within ECD_00669at 700.007 kb on - strand, within ECD_00669at 700.007 kb on - strand, within ECD_00669at 700.007 kb on - strand, within ECD_00669at 700.126 kb on - strand, within ECD_00669at 700.157 kb on + strand, within ECD_00669at 700.203 kb on - strand, within ECD_00669at 700.204 kb on + strand, within ECD_00669at 700.205 kb on - strand, within ECD_00669at 700.205 kb on - strand, within ECD_00669at 700.214 kb on + strand, within ECD_00669at 700.239 kb on - strand, within ECD_00669at 700.248 kb on - strand, within ECD_00669at 700.401 kb on + strand, within ECD_00669at 700.539 kb on - strand, within ECD_00669at 700.664 kb on + strand, within ECD_00669at 700.667 kb on + strand, within ECD_00669at 700.667 kb on + strand, within ECD_00669at 700.668 kb on - strand, within ECD_00669at 700.690 kb on + strand, within ECD_00669at 700.691 kb on - strand, within ECD_00669at 700.691 kb on - strand, within ECD_00669at 700.691 kb on - strand, within ECD_00669at 700.691 kb on - strand, within ECD_00669at 700.769 kb on + strand, within ECD_00669at 700.794 kb on - strand, within ECD_00669at 700.811 kb on - strand, within ECD_00669at 700.945 kb on + strand, within ECD_00669at 700.945 kb on + strand, within ECD_00669at 700.946 kb on - strand, within ECD_00669at 700.960 kb on + strand, within ECD_00669at 700.971 kb on + strand, within ECD_00669at 700.989 kb on - strandat 700.989 kb on - strandat 701.001 kb on + strandat 701.086 kb on + strandat 701.151 kb on + strandat 701.308 kb on + strandat 701.351 kb on - strandat 701.363 kb on + strandat 701.364 kb on - strandat 701.447 kb on + strandat 701.586 kb on + strand, within ECD_00670at 701.638 kb on + strand, within ECD_00670at 701.846 kb on + strand, within ECD_00670at 701.847 kb on - strand, within ECD_00670at 702.021 kb on + strand, within ECD_00670

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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698,640 + ECD_00668 0.32 +0.0
698,640 + ECD_00668 0.32 +0.3
698,739 + ECD_00668 0.39 +0.4
698,846 - ECD_00668 0.47 -0.6
698,997 + ECD_00668 0.58 +0.3
698,998 - ECD_00668 0.58 -0.2
699,040 + ECD_00668 0.61 -0.6
699,041 - ECD_00668 0.61 +1.3
699,041 - ECD_00668 0.61 +0.1
699,041 - ECD_00668 0.61 +0.3
699,571 + +0.2
699,618 - +0.6
699,748 - +0.1
699,755 + -0.3
699,755 + +0.5
699,756 - -0.4
699,756 - +0.4
699,758 - +0.3
699,772 + +0.1
699,773 - +0.9
699,838 + ECD_00669 0.13 -0.3
699,976 - ECD_00669 0.23 -0.2
699,978 + ECD_00669 0.23 -0.8
700,006 + ECD_00669 0.25 +0.4
700,006 + ECD_00669 0.25 +1.1
700,007 - ECD_00669 0.25 -0.2
700,007 - ECD_00669 0.25 -0.2
700,007 - ECD_00669 0.25 +0.9
700,126 - ECD_00669 0.33 +1.0
700,157 + ECD_00669 0.35 -1.9
700,203 - ECD_00669 0.38 +0.4
700,204 + ECD_00669 0.38 -1.0
700,205 - ECD_00669 0.38 -0.3
700,205 - ECD_00669 0.38 -0.8
700,214 + ECD_00669 0.39 -0.1
700,239 - ECD_00669 0.40 -0.1
700,248 - ECD_00669 0.41 -0.6
700,401 + ECD_00669 0.51 +0.2
700,539 - ECD_00669 0.61 +0.7
700,664 + ECD_00669 0.69 -1.1
700,667 + ECD_00669 0.69 +0.3
700,667 + ECD_00669 0.69 +1.1
700,668 - ECD_00669 0.69 +0.1
700,690 + ECD_00669 0.71 +0.6
700,691 - ECD_00669 0.71 -1.8
700,691 - ECD_00669 0.71 +0.4
700,691 - ECD_00669 0.71 +0.3
700,691 - ECD_00669 0.71 +0.2
700,769 + ECD_00669 0.76 -0.3
700,794 - ECD_00669 0.78 -0.4
700,811 - ECD_00669 0.79 +0.5
700,945 + ECD_00669 0.88 -0.4
700,945 + ECD_00669 0.88 +0.2
700,946 - ECD_00669 0.88 -1.8
700,960 + ECD_00669 0.89 -0.6
700,971 + ECD_00669 0.90 -0.8
700,989 - +0.1
700,989 - +0.4
701,001 + +0.4
701,086 + +0.6
701,151 + +0.0
701,308 + -0.3
701,351 - +0.1
701,363 + +0.7
701,364 - +0.2
701,447 + -0.4
701,586 + ECD_00670 0.26 +0.0
701,638 + ECD_00670 0.33 +0.4
701,846 + ECD_00670 0.61 -0.3
701,847 - ECD_00670 0.61 +0.7
702,021 + ECD_00670 0.85 -1.1

Or see this region's nucleotide sequence