Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00283 and ECD_00284 are separated by 146 nucleotides ECD_00284 and ECD_00285 are separated by 97 nucleotides ECD_00285 and ECD_00286 are separated by 238 nucleotides
ECD_00283: ECD_00283 - amino acid exporter for proline, lysine, glutamate, homoserine, at 315,295 to 315,966
_00283
ECD_00284: ECD_00284 - periplasmic protein, function unknown, YhcN family, at 316,113 to 316,388
_00284
ECD_00285: ECD_00285 - propionate catabolism operon regulatory protein, at 316,486 to 318,072
_00285
ECD_00286: ECD_00286 - 2-methylisocitrate lyase, at 318,311 to 319,201
_00286
Position (kb) 316
317
318
319 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 315.508 kb on + strand, within ECD_00283 at 315.619 kb on + strand, within ECD_00283 at 315.842 kb on - strand, within ECD_00283 at 315.842 kb on - strand, within ECD_00283 at 316.033 kb on + strand at 316.056 kb on + strand at 316.376 kb on + strand at 316.404 kb on - strand at 316.713 kb on + strand, within ECD_00285 at 316.789 kb on + strand, within ECD_00285 at 316.916 kb on + strand, within ECD_00285 at 316.917 kb on - strand, within ECD_00285 at 317.369 kb on + strand, within ECD_00285 at 317.544 kb on - strand, within ECD_00285 at 317.629 kb on + strand, within ECD_00285 at 317.669 kb on + strand, within ECD_00285 at 317.670 kb on - strand, within ECD_00285 at 317.670 kb on - strand, within ECD_00285 at 317.670 kb on - strand, within ECD_00285 at 317.670 kb on - strand, within ECD_00285 at 317.670 kb on - strand, within ECD_00285 at 317.670 kb on - strand, within ECD_00285 at 317.673 kb on + strand, within ECD_00285 at 317.674 kb on - strand, within ECD_00285 at 317.674 kb on - strand, within ECD_00285 at 317.674 kb on - strand, within ECD_00285 at 317.727 kb on + strand, within ECD_00285 at 317.918 kb on + strand at 317.956 kb on - strand at 318.052 kb on - strand at 318.497 kb on - strand, within ECD_00286 at 318.625 kb on + strand, within ECD_00286 at 318.649 kb on + strand, within ECD_00286 at 318.839 kb on + strand, within ECD_00286 at 318.840 kb on - strand, within ECD_00286 at 318.970 kb on + strand, within ECD_00286 at 319.061 kb on + strand, within ECD_00286 at 319.061 kb on + strand, within ECD_00286 at 319.061 kb on + strand, within ECD_00286 at 319.062 kb on - strand, within ECD_00286 at 319.062 kb on - strand, within ECD_00286 at 319.062 kb on - strand, within ECD_00286 at 319.062 kb on - strand, within ECD_00286 at 319.062 kb on - strand, within ECD_00286 at 319.062 kb on - strand, within ECD_00286
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 315,508 + ECD_00283 0.32 -0.6 315,619 + ECD_00283 0.48 +0.4 315,842 - ECD_00283 0.81 -0.7 315,842 - ECD_00283 0.81 -0.3 316,033 + +0.4 316,056 + +0.6 316,376 + +0.4 316,404 - +0.7 316,713 + ECD_00285 0.14 +0.9 316,789 + ECD_00285 0.19 +0.5 316,916 + ECD_00285 0.27 -1.0 316,917 - ECD_00285 0.27 -1.0 317,369 + ECD_00285 0.56 +0.8 317,544 - ECD_00285 0.67 -0.1 317,629 + ECD_00285 0.72 -0.7 317,669 + ECD_00285 0.75 +0.5 317,670 - ECD_00285 0.75 +0.3 317,670 - ECD_00285 0.75 -1.1 317,670 - ECD_00285 0.75 -0.5 317,670 - ECD_00285 0.75 +0.1 317,670 - ECD_00285 0.75 -0.2 317,670 - ECD_00285 0.75 -1.4 317,673 + ECD_00285 0.75 -0.3 317,674 - ECD_00285 0.75 +0.2 317,674 - ECD_00285 0.75 -0.1 317,674 - ECD_00285 0.75 -0.4 317,727 + ECD_00285 0.78 -0.4 317,918 + -0.4 317,956 - -0.9 318,052 - -0.4 318,497 - ECD_00286 0.21 -0.4 318,625 + ECD_00286 0.35 -1.1 318,649 + ECD_00286 0.38 -0.3 318,839 + ECD_00286 0.59 +0.1 318,840 - ECD_00286 0.59 +0.6 318,970 + ECD_00286 0.74 -0.1 319,061 + ECD_00286 0.84 -0.1 319,061 + ECD_00286 0.84 -0.6 319,061 + ECD_00286 0.84 +0.3 319,062 - ECD_00286 0.84 -2.8 319,062 - ECD_00286 0.84 +2.2 319,062 - ECD_00286 0.84 +0.7 319,062 - ECD_00286 0.84 -0.3 319,062 - ECD_00286 0.84 +0.4 319,062 - ECD_00286 0.84 -0.3
Or see this region's nucleotide sequence