Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00238 and ECD_00239 are separated by 287 nucleotides ECD_00239 and ECD_00240 are separated by 11 nucleotides
ECD_00238: ECD_00238 - outer membrane phosphoporin protein E, at 263,558 to 264,595
_00238
ECD_00239: ECD_00239 - gamma-glutamate kinase, at 264,883 to 265,986
_00239
ECD_00240: ECD_00240 - gamma-glutamylphosphate reductase, at 265,998 to 267,251
_00240
Position (kb) 264
265
266 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 263.971 kb on + strand, within ECD_00238 at 263.983 kb on + strand, within ECD_00238 at 264.013 kb on - strand, within ECD_00238 at 264.238 kb on - strand, within ECD_00238 at 264.238 kb on - strand, within ECD_00238 at 264.467 kb on - strand, within ECD_00238 at 264.573 kb on - strand at 264.727 kb on + strand at 264.849 kb on + strand at 264.908 kb on + strand at 264.908 kb on + strand at 264.929 kb on + strand at 264.995 kb on + strand, within ECD_00239 at 265.163 kb on - strand, within ECD_00239 at 265.204 kb on - strand, within ECD_00239 at 265.266 kb on + strand, within ECD_00239 at 265.314 kb on + strand, within ECD_00239 at 265.314 kb on + strand, within ECD_00239 at 265.315 kb on - strand, within ECD_00239 at 265.406 kb on - strand, within ECD_00239 at 265.446 kb on + strand, within ECD_00239 at 265.446 kb on + strand, within ECD_00239 at 265.446 kb on + strand, within ECD_00239 at 265.721 kb on + strand, within ECD_00239 at 265.782 kb on + strand, within ECD_00239 at 265.783 kb on - strand, within ECD_00239 at 265.783 kb on - strand, within ECD_00239 at 265.870 kb on + strand, within ECD_00239 at 265.928 kb on + strand at 266.353 kb on - strand, within ECD_00240 at 266.353 kb on - strand, within ECD_00240 at 266.353 kb on - strand, within ECD_00240 at 266.570 kb on + strand, within ECD_00240 at 266.574 kb on + strand, within ECD_00240 at 266.574 kb on + strand, within ECD_00240 at 266.574 kb on + strand, within ECD_00240 at 266.574 kb on + strand, within ECD_00240 at 266.662 kb on + strand, within ECD_00240 at 266.668 kb on + strand, within ECD_00240 at 266.679 kb on + strand, within ECD_00240 at 266.679 kb on + strand, within ECD_00240 at 266.679 kb on + strand, within ECD_00240 at 266.713 kb on + strand, within ECD_00240 at 266.713 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.757 kb on - strand, within ECD_00240 at 266.760 kb on - strand, within ECD_00240 at 266.816 kb on - strand, within ECD_00240 at 266.848 kb on + strand, within ECD_00240
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 263,971 + ECD_00238 0.40 -0.9 263,983 + ECD_00238 0.41 +0.7 264,013 - ECD_00238 0.44 -0.1 264,238 - ECD_00238 0.66 -0.3 264,238 - ECD_00238 0.66 +0.3 264,467 - ECD_00238 0.88 +0.4 264,573 - -0.4 264,727 + -0.8 264,849 + +0.2 264,908 + -5.2 264,908 + -4.7 264,929 + -3.1 264,995 + ECD_00239 0.10 -2.5 265,163 - ECD_00239 0.25 -5.1 265,204 - ECD_00239 0.29 -4.2 265,266 + ECD_00239 0.35 -5.8 265,314 + ECD_00239 0.39 -3.7 265,314 + ECD_00239 0.39 -2.5 265,315 - ECD_00239 0.39 -3.9 265,406 - ECD_00239 0.47 -3.3 265,446 + ECD_00239 0.51 -3.7 265,446 + ECD_00239 0.51 -3.4 265,446 + ECD_00239 0.51 -1.2 265,721 + ECD_00239 0.76 -0.1 265,782 + ECD_00239 0.81 -4.0 265,783 - ECD_00239 0.82 -3.9 265,783 - ECD_00239 0.82 -3.5 265,870 + ECD_00239 0.89 -3.4 265,928 + -1.6 266,353 - ECD_00240 0.28 -3.5 266,353 - ECD_00240 0.28 -2.3 266,353 - ECD_00240 0.28 -5.5 266,570 + ECD_00240 0.46 -3.9 266,574 + ECD_00240 0.46 -2.7 266,574 + ECD_00240 0.46 -3.0 266,574 + ECD_00240 0.46 -3.8 266,574 + ECD_00240 0.46 -4.3 266,662 + ECD_00240 0.53 -2.0 266,668 + ECD_00240 0.53 -3.3 266,679 + ECD_00240 0.54 -4.4 266,679 + ECD_00240 0.54 -5.5 266,679 + ECD_00240 0.54 -2.7 266,713 + ECD_00240 0.57 -5.0 266,713 + ECD_00240 0.57 -3.4 266,756 + ECD_00240 0.60 -5.1 266,756 + ECD_00240 0.60 -5.7 266,756 + ECD_00240 0.60 -5.1 266,756 + ECD_00240 0.60 -3.6 266,756 + ECD_00240 0.60 -2.7 266,757 - ECD_00240 0.61 -4.4 266,760 - ECD_00240 0.61 -1.9 266,816 - ECD_00240 0.65 -1.6 266,848 + ECD_00240 0.68 -1.9
Or see this region's nucleotide sequence