Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01528 and ECD_01529 are separated by 14 nucleotides ECD_01529 and ECD_01530 are separated by 73 nucleotides ECD_01530 and ECD_01531 are separated by 66 nucleotides ECD_01531 and ECD_01532 are separated by 216 nucleotides ECD_01532 and ECD_01533 are separated by 211 nucleotides ECD_01533 and ECD_01535 overlap by 40 nucleotides
ECD_01528: ECD_01528 - antitermination protein Q-like protein from lambdoid prophage DLP12, at 1,589,208 to 1,589,588
_01528
ECD_01529: ECD_01529 - Qin prophage; uncharacterized protein, at 1,589,603 to 1,590,181
_01529
ECD_01530: ECD_01530 - hypothetical protein, at 1,590,255 to 1,590,533
_01530
ECD_01531: ECD_01531 - Qin prophage; uncharacterized protein, at 1,590,600 to 1,590,851
_01531
ECD_01532: ECD_01532 - Qin prophage; small toxic polypeptide, at 1,591,068 to 1,591,223
_01532
ECD_01533: ECD_01533 - hypothetical protein, at 1,591,435 to 1,591,524
_01533
ECD_01535: ECD_01535 - hypothetical protein, at 1,591,485 to 1,591,844
_01535
Position (kb) 1590
1591 Strain fitness (log2 ratio) -1
0
1 at 1589.853 kb on + strand, within ECD_01529 at 1589.854 kb on - strand, within ECD_01529 at 1590.756 kb on - strand, within ECD_01531 at 1591.201 kb on - strand, within ECD_01532 at 1591.408 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 1,589,853 + ECD_01529 0.43 +0.9 1,589,854 - ECD_01529 0.43 +0.8 1,590,756 - ECD_01531 0.62 -0.1 1,591,201 - ECD_01532 0.85 +0.7 1,591,408 - +0.0
Or see this region's nucleotide sequence