Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03359 and ECD_03360 are separated by 798 nucleotides ECD_03360 and ECD_03361 are separated by 338 nucleotides
ECD_03359: ECD_03359 - acid-resistance membrane protein, at 3,518,182 to 3,518,754
_03359
ECD_03360: ECD_03360 - gad regulon transcriptional activator, at 3,519,553 to 3,520,080
_03360
ECD_03361: ECD_03361 - anaerobic multidrug efflux transporter, ArcA-regulated, at 3,520,419 to 3,521,576
_03361
Position (kb)
3519
3520
3521 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3518.591 kb on + strand, within ECD_03359 at 3518.591 kb on + strand, within ECD_03359 at 3518.699 kb on + strand at 3518.753 kb on - strand at 3518.753 kb on - strand at 3518.808 kb on - strand at 3518.880 kb on - strand at 3519.252 kb on + strand at 3519.921 kb on + strand, within ECD_03360 at 3520.014 kb on + strand, within ECD_03360 at 3520.089 kb on + strand at 3520.089 kb on + strand at 3520.090 kb on - strand at 3520.090 kb on - strand at 3520.090 kb on - strand at 3520.182 kb on + strand at 3520.193 kb on + strand at 3520.193 kb on + strand at 3520.194 kb on - strand at 3520.194 kb on - strand at 3520.194 kb on - strand at 3520.194 kb on - strand at 3520.194 kb on - strand at 3520.199 kb on + strand at 3520.209 kb on + strand at 3520.315 kb on - strand at 3520.359 kb on + strand at 3520.359 kb on + strand at 3520.359 kb on + strand at 3520.360 kb on - strand at 3520.415 kb on + strand at 3520.593 kb on + strand, within ECD_03361 at 3520.594 kb on - strand, within ECD_03361 at 3520.609 kb on + strand, within ECD_03361 at 3520.610 kb on - strand, within ECD_03361 at 3520.610 kb on - strand, within ECD_03361 at 3520.629 kb on - strand, within ECD_03361 at 3520.631 kb on + strand, within ECD_03361 at 3520.631 kb on + strand, within ECD_03361 at 3520.708 kb on + strand, within ECD_03361 at 3520.815 kb on + strand, within ECD_03361 at 3520.815 kb on + strand, within ECD_03361 at 3520.815 kb on + strand, within ECD_03361 at 3520.816 kb on - strand, within ECD_03361 at 3520.834 kb on - strand, within ECD_03361 at 3520.947 kb on - strand, within ECD_03361 at 3520.997 kb on + strand, within ECD_03361 at 3521.023 kb on + strand, within ECD_03361 at 3521.024 kb on - strand, within ECD_03361 at 3521.024 kb on - strand, within ECD_03361 at 3521.043 kb on + strand, within ECD_03361
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 3,518,591 + ECD_03359 0.71 +0.8 3,518,591 + ECD_03359 0.71 +0.8 3,518,699 + -2.5 3,518,753 - +0.5 3,518,753 - -0.1 3,518,808 - -0.6 3,518,880 - -0.1 3,519,252 + -0.6 3,519,921 + ECD_03360 0.70 +1.1 3,520,014 + ECD_03360 0.87 +0.4 3,520,089 + -1.0 3,520,089 + +0.4 3,520,090 - -0.5 3,520,090 - +0.7 3,520,090 - +0.3 3,520,182 + -0.2 3,520,193 + +2.6 3,520,193 + +0.3 3,520,194 - -1.2 3,520,194 - +0.1 3,520,194 - +0.4 3,520,194 - -0.4 3,520,194 - +0.2 3,520,199 + +0.5 3,520,209 + +0.8 3,520,315 - -3.9 3,520,359 + +0.4 3,520,359 + +0.2 3,520,359 + +0.4 3,520,360 - +0.5 3,520,415 + +1.0 3,520,593 + ECD_03361 0.15 +0.7 3,520,594 - ECD_03361 0.15 +0.2 3,520,609 + ECD_03361 0.16 +0.5 3,520,610 - ECD_03361 0.16 -0.2 3,520,610 - ECD_03361 0.16 +0.5 3,520,629 - ECD_03361 0.18 +0.2 3,520,631 + ECD_03361 0.18 -0.0 3,520,631 + ECD_03361 0.18 +0.4 3,520,708 + ECD_03361 0.25 -0.0 3,520,815 + ECD_03361 0.34 -0.3 3,520,815 + ECD_03361 0.34 -0.4 3,520,815 + ECD_03361 0.34 +1.7 3,520,816 - ECD_03361 0.34 -2.0 3,520,834 - ECD_03361 0.36 +0.8 3,520,947 - ECD_03361 0.46 -0.1 3,520,997 + ECD_03361 0.50 -2.9 3,521,023 + ECD_03361 0.52 -2.4 3,521,024 - ECD_03361 0.52 -0.7 3,521,024 - ECD_03361 0.52 -0.0 3,521,043 + ECD_03361 0.54 +0.1
Or see this region's nucleotide sequence