Strain Fitness in Escherichia coli BL21 around ECD_00877

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00876 and ECD_00877 are separated by 132 nucleotidesECD_00877 and ECD_00878 are separated by 11 nucleotides ECD_00876: ECD_00876 - pyruvate dehydrogenase, thiamine triphosphate-binding, FAD-binding, at 914,035 to 915,753 _00876 ECD_00877: ECD_00877 - HCP oxidoreductase, NADH-dependent, at 915,886 to 916,854 _00877 ECD_00878: ECD_00878 - hybrid-cluster [4Fe-2S-2O] subunit of anaerobic terminal reductases, at 916,866 to 918,518 _00878 Position (kb) 915 916 917Strain fitness (log2 ratio) -2 -1 0 1at 915.018 kb on - strand, within ECD_00876at 915.182 kb on - strand, within ECD_00876at 915.334 kb on + strand, within ECD_00876at 915.394 kb on + strand, within ECD_00876at 915.511 kb on + strand, within ECD_00876at 915.731 kb on + strandat 915.879 kb on - strandat 915.985 kb on - strand, within ECD_00877at 915.986 kb on + strand, within ECD_00877at 915.987 kb on - strand, within ECD_00877at 916.237 kb on - strand, within ECD_00877at 916.276 kb on + strand, within ECD_00877at 916.276 kb on + strand, within ECD_00877at 916.372 kb on - strand, within ECD_00877at 916.393 kb on - strand, within ECD_00877at 916.543 kb on - strand, within ECD_00877at 916.574 kb on + strand, within ECD_00877at 916.652 kb on + strand, within ECD_00877at 916.653 kb on - strand, within ECD_00877at 916.685 kb on + strand, within ECD_00877at 916.686 kb on - strand, within ECD_00877at 916.751 kb on + strand, within ECD_00877at 916.752 kb on - strand, within ECD_00877at 917.145 kb on - strand, within ECD_00878at 917.145 kb on - strand, within ECD_00878at 917.145 kb on - strand, within ECD_00878at 917.212 kb on + strand, within ECD_00878at 917.279 kb on - strand, within ECD_00878at 917.325 kb on - strand, within ECD_00878at 917.543 kb on - strand, within ECD_00878at 917.843 kb on - strand, within ECD_00878

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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915,018 - ECD_00876 0.57 -0.1
915,182 - ECD_00876 0.67 -1.1
915,334 + ECD_00876 0.76 -0.3
915,394 + ECD_00876 0.79 -0.2
915,511 + ECD_00876 0.86 -0.1
915,731 + -0.1
915,879 - +0.0
915,985 - ECD_00877 0.10 +0.1
915,986 + ECD_00877 0.10 -0.1
915,987 - ECD_00877 0.10 +1.4
916,237 - ECD_00877 0.36 +0.6
916,276 + ECD_00877 0.40 -0.4
916,276 + ECD_00877 0.40 -0.6
916,372 - ECD_00877 0.50 +0.5
916,393 - ECD_00877 0.52 -0.5
916,543 - ECD_00877 0.68 -0.0
916,574 + ECD_00877 0.71 -0.2
916,652 + ECD_00877 0.79 -0.0
916,653 - ECD_00877 0.79 -1.7
916,685 + ECD_00877 0.82 -1.9
916,686 - ECD_00877 0.83 +1.2
916,751 + ECD_00877 0.89 -2.6
916,752 - ECD_00877 0.89 -1.8
917,145 - ECD_00878 0.17 +0.1
917,145 - ECD_00878 0.17 +0.2
917,145 - ECD_00878 0.17 +1.1
917,212 + ECD_00878 0.21 +0.4
917,279 - ECD_00878 0.25 -0.5
917,325 - ECD_00878 0.28 -0.7
917,543 - ECD_00878 0.41 -0.9
917,843 - ECD_00878 0.59 +0.8

Or see this region's nucleotide sequence