Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04204 and ECD_04205 are separated by 115 nucleotides ECD_04205 and ECD_04206 are separated by 40 nucleotides
ECD_04204: ECD_04204 - putative 2-hydroxyglutaryl-CoA dehydratase, at 4,473,978 to 4,475,129
_04204
ECD_04205: ECD_04205 - zinc-type alcohol dehydrogenase-like protein, at 4,475,245 to 4,476,525
_04205
ECD_04206: ECD_04206 - multidrug efflux system protein, at 4,476,566 to 4,477,798
_04206
Position (kb) 4475
4476
4477 Strain fitness (log2 ratio) -1
0
1 at 4474.261 kb on + strand, within ECD_04204 at 4474.262 kb on - strand, within ECD_04204 at 4474.520 kb on - strand, within ECD_04204 at 4474.563 kb on + strand, within ECD_04204 at 4474.564 kb on - strand, within ECD_04204 at 4474.780 kb on + strand, within ECD_04204 at 4474.780 kb on + strand, within ECD_04204 at 4474.781 kb on - strand, within ECD_04204 at 4474.781 kb on - strand, within ECD_04204 at 4474.781 kb on - strand, within ECD_04204 at 4474.840 kb on + strand, within ECD_04204 at 4474.886 kb on + strand, within ECD_04204 at 4475.003 kb on + strand, within ECD_04204 at 4475.015 kb on - strand at 4475.015 kb on - strand at 4475.015 kb on - strand at 4475.157 kb on + strand at 4475.177 kb on - strand at 4475.179 kb on + strand at 4475.307 kb on + strand at 4475.341 kb on - strand at 4475.519 kb on - strand, within ECD_04205 at 4475.778 kb on + strand, within ECD_04205 at 4475.782 kb on - strand, within ECD_04205 at 4475.782 kb on - strand, within ECD_04205 at 4475.826 kb on + strand, within ECD_04205 at 4476.001 kb on - strand, within ECD_04205 at 4476.001 kb on - strand, within ECD_04205 at 4476.069 kb on + strand, within ECD_04205 at 4476.070 kb on - strand, within ECD_04205 at 4476.519 kb on + strand at 4476.526 kb on - strand at 4476.537 kb on + strand at 4476.582 kb on - strand at 4476.748 kb on + strand, within ECD_04206 at 4476.749 kb on - strand, within ECD_04206 at 4476.749 kb on - strand, within ECD_04206 at 4476.749 kb on - strand, within ECD_04206 at 4476.753 kb on - strand, within ECD_04206 at 4476.799 kb on + strand, within ECD_04206 at 4476.950 kb on - strand, within ECD_04206 at 4477.056 kb on - strand, within ECD_04206 at 4477.116 kb on + strand, within ECD_04206 at 4477.116 kb on + strand, within ECD_04206 at 4477.116 kb on + strand, within ECD_04206 at 4477.116 kb on + strand, within ECD_04206 at 4477.117 kb on - strand, within ECD_04206 at 4477.117 kb on - strand, within ECD_04206 at 4477.122 kb on - strand, within ECD_04206 at 4477.264 kb on + strand, within ECD_04206 at 4477.431 kb on + strand, within ECD_04206 at 4477.456 kb on + strand, within ECD_04206 at 4477.456 kb on + strand, within ECD_04206 at 4477.457 kb on - strand, within ECD_04206 at 4477.498 kb on + strand, within ECD_04206
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,474,261 + ECD_04204 0.25 +0.9 4,474,262 - ECD_04204 0.25 -0.2 4,474,520 - ECD_04204 0.47 -0.1 4,474,563 + ECD_04204 0.51 +0.7 4,474,564 - ECD_04204 0.51 +0.7 4,474,780 + ECD_04204 0.70 -1.5 4,474,780 + ECD_04204 0.70 +0.4 4,474,781 - ECD_04204 0.70 +0.0 4,474,781 - ECD_04204 0.70 +0.3 4,474,781 - ECD_04204 0.70 +0.2 4,474,840 + ECD_04204 0.75 -0.7 4,474,886 + ECD_04204 0.79 -0.3 4,475,003 + ECD_04204 0.89 -0.4 4,475,015 - -0.4 4,475,015 - -0.0 4,475,015 - +0.1 4,475,157 + -0.6 4,475,177 - -0.4 4,475,179 + -0.1 4,475,307 + +0.3 4,475,341 - -1.0 4,475,519 - ECD_04205 0.21 +0.4 4,475,778 + ECD_04205 0.42 +0.4 4,475,782 - ECD_04205 0.42 +0.1 4,475,782 - ECD_04205 0.42 -0.4 4,475,826 + ECD_04205 0.45 -0.5 4,476,001 - ECD_04205 0.59 -1.7 4,476,001 - ECD_04205 0.59 -0.9 4,476,069 + ECD_04205 0.64 +0.1 4,476,070 - ECD_04205 0.64 -0.7 4,476,519 + +0.3 4,476,526 - +0.3 4,476,537 + -1.4 4,476,582 - +0.1 4,476,748 + ECD_04206 0.15 +0.9 4,476,749 - ECD_04206 0.15 +0.2 4,476,749 - ECD_04206 0.15 -1.2 4,476,749 - ECD_04206 0.15 +0.5 4,476,753 - ECD_04206 0.15 +0.0 4,476,799 + ECD_04206 0.19 -0.1 4,476,950 - ECD_04206 0.31 +0.0 4,477,056 - ECD_04206 0.40 -0.1 4,477,116 + ECD_04206 0.45 +0.2 4,477,116 + ECD_04206 0.45 +0.4 4,477,116 + ECD_04206 0.45 +1.6 4,477,116 + ECD_04206 0.45 -0.4 4,477,117 - ECD_04206 0.45 +0.8 4,477,117 - ECD_04206 0.45 -0.6 4,477,122 - ECD_04206 0.45 +0.6 4,477,264 + ECD_04206 0.57 -0.5 4,477,431 + ECD_04206 0.70 -0.2 4,477,456 + ECD_04206 0.72 -0.4 4,477,456 + ECD_04206 0.72 +0.0 4,477,457 - ECD_04206 0.72 -0.1 4,477,498 + ECD_04206 0.76 +0.3
Or see this region's nucleotide sequence