Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03967 and ECD_03968 overlap by 4 nucleotides ECD_03968 and ECD_03969 are separated by 110 nucleotides ECD_03969 and ECD_03970 overlap by 4 nucleotides
ECD_03967: ECD_03967 - ribophosphonate triphosphate hydrolase, at 4,223,269 to 4,224,405
_03967
ECD_03968: ECD_03968 - ribophosphonate triphosphate synthase subunit; putative ABC transporter-related ATPase, at 4,224,402 to 4,225,082
_03968
ECD_03969: ECD_03969 - carbon-phosphorus lyase complex subunit, putative ATP transporter ATP-binding protein, at 4,225,193 to 4,225,951
_03969
ECD_03970: ECD_03970 - carbon-phosphorus lyase, SAM-dependent, at 4,225,948 to 4,226,793
_03970
Position (kb) 4224
4225
4226 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4223.501 kb on + strand, within ECD_03967 at 4223.819 kb on + strand, within ECD_03967 at 4223.849 kb on + strand, within ECD_03967 at 4223.849 kb on + strand, within ECD_03967 at 4223.850 kb on - strand, within ECD_03967 at 4223.862 kb on - strand, within ECD_03967 at 4223.865 kb on - strand, within ECD_03967 at 4223.873 kb on + strand, within ECD_03967 at 4223.874 kb on - strand, within ECD_03967 at 4223.874 kb on - strand, within ECD_03967 at 4224.130 kb on + strand, within ECD_03967 at 4224.362 kb on - strand at 4224.362 kb on - strand at 4224.387 kb on + strand at 4224.388 kb on - strand at 4224.446 kb on + strand at 4224.447 kb on - strand at 4224.450 kb on + strand at 4224.474 kb on + strand, within ECD_03968 at 4224.474 kb on + strand, within ECD_03968 at 4224.475 kb on - strand, within ECD_03968 at 4224.475 kb on - strand, within ECD_03968 at 4224.591 kb on - strand, within ECD_03968 at 4224.591 kb on - strand, within ECD_03968 at 4224.770 kb on + strand, within ECD_03968 at 4224.910 kb on + strand, within ECD_03968 at 4224.910 kb on + strand, within ECD_03968 at 4224.910 kb on + strand, within ECD_03968 at 4224.910 kb on + strand, within ECD_03968 at 4224.910 kb on + strand, within ECD_03968 at 4224.911 kb on - strand, within ECD_03968 at 4224.911 kb on - strand, within ECD_03968 at 4224.911 kb on - strand, within ECD_03968 at 4224.911 kb on - strand, within ECD_03968 at 4224.930 kb on + strand, within ECD_03968 at 4225.071 kb on + strand at 4225.071 kb on + strand at 4225.072 kb on - strand at 4225.072 kb on - strand at 4225.076 kb on + strand at 4225.172 kb on + strand at 4225.229 kb on - strand at 4225.335 kb on - strand, within ECD_03969 at 4225.447 kb on + strand, within ECD_03969 at 4225.448 kb on - strand, within ECD_03969 at 4225.504 kb on + strand, within ECD_03969 at 4225.636 kb on + strand, within ECD_03969 at 4225.744 kb on - strand, within ECD_03969 at 4225.744 kb on - strand, within ECD_03969 at 4225.761 kb on + strand, within ECD_03969 at 4225.937 kb on + strand at 4225.938 kb on - strand at 4226.045 kb on + strand, within ECD_03970 at 4226.045 kb on + strand, within ECD_03970 at 4226.045 kb on + strand, within ECD_03970 at 4226.045 kb on + strand, within ECD_03970 at 4226.045 kb on + strand, within ECD_03970 at 4226.045 kb on + strand, within ECD_03970 at 4226.046 kb on - strand, within ECD_03970 at 4226.046 kb on - strand, within ECD_03970 at 4226.046 kb on - strand, within ECD_03970
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,223,501 + ECD_03967 0.20 -0.1 4,223,819 + ECD_03967 0.48 -0.3 4,223,849 + ECD_03967 0.51 -0.4 4,223,849 + ECD_03967 0.51 +1.2 4,223,850 - ECD_03967 0.51 -0.8 4,223,862 - ECD_03967 0.52 -0.7 4,223,865 - ECD_03967 0.52 +0.5 4,223,873 + ECD_03967 0.53 +0.3 4,223,874 - ECD_03967 0.53 +0.5 4,223,874 - ECD_03967 0.53 +0.3 4,224,130 + ECD_03967 0.76 +0.5 4,224,362 - -1.4 4,224,362 - +1.5 4,224,387 + +1.8 4,224,388 - +0.2 4,224,446 + -0.6 4,224,447 - -1.8 4,224,450 + +0.2 4,224,474 + ECD_03968 0.11 +0.2 4,224,474 + ECD_03968 0.11 +0.0 4,224,475 - ECD_03968 0.11 +0.2 4,224,475 - ECD_03968 0.11 +0.3 4,224,591 - ECD_03968 0.28 +0.3 4,224,591 - ECD_03968 0.28 +1.4 4,224,770 + ECD_03968 0.54 +0.1 4,224,910 + ECD_03968 0.75 -0.7 4,224,910 + ECD_03968 0.75 -0.3 4,224,910 + ECD_03968 0.75 +0.1 4,224,910 + ECD_03968 0.75 +0.7 4,224,910 + ECD_03968 0.75 -0.4 4,224,911 - ECD_03968 0.75 -0.4 4,224,911 - ECD_03968 0.75 -0.5 4,224,911 - ECD_03968 0.75 +0.3 4,224,911 - ECD_03968 0.75 +0.7 4,224,930 + ECD_03968 0.78 +0.4 4,225,071 + +0.1 4,225,071 + +0.1 4,225,072 - +0.3 4,225,072 - -0.0 4,225,076 + -0.5 4,225,172 + -0.4 4,225,229 - +0.9 4,225,335 - ECD_03969 0.19 +0.2 4,225,447 + ECD_03969 0.33 +1.5 4,225,448 - ECD_03969 0.34 -0.3 4,225,504 + ECD_03969 0.41 +0.5 4,225,636 + ECD_03969 0.58 -1.5 4,225,744 - ECD_03969 0.73 -0.3 4,225,744 - ECD_03969 0.73 +0.6 4,225,761 + ECD_03969 0.75 +1.6 4,225,937 + +0.0 4,225,938 - -0.3 4,226,045 + ECD_03970 0.11 +0.9 4,226,045 + ECD_03970 0.11 -1.1 4,226,045 + ECD_03970 0.11 +1.2 4,226,045 + ECD_03970 0.11 +0.4 4,226,045 + ECD_03970 0.11 -0.1 4,226,045 + ECD_03970 0.11 -0.4 4,226,046 - ECD_03970 0.12 +0.7 4,226,046 - ECD_03970 0.12 -0.1 4,226,046 - ECD_03970 0.12 +0.5
Or see this region's nucleotide sequence