Strain Fitness in Escherichia coli BL21 around ECD_02063

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02062 and ECD_02063 are separated by 195 nucleotidesECD_02063 and ECD_02064 are separated by 37 nucleotides ECD_02062: ECD_02062 - beta-D-glucoside glucohydrolase, periplasmic, at 2,114,596 to 2,116,893 _02062 ECD_02063: ECD_02063 - D-lactate dehydrogenase, FAD-binding, NADH independent, at 2,117,089 to 2,118,804 _02063 ECD_02064: ECD_02064 - D-alanyl-D-alanine endopeptidase, at 2,118,842 to 2,119,774 _02064 Position (kb) 2117 2118 2119Strain fitness (log2 ratio) -2 -1 0 1at 2116.186 kb on - strand, within ECD_02062at 2116.187 kb on + strand, within ECD_02062at 2116.188 kb on - strand, within ECD_02062at 2116.230 kb on - strand, within ECD_02062at 2116.359 kb on - strand, within ECD_02062at 2116.359 kb on - strand, within ECD_02062at 2116.359 kb on - strand, within ECD_02062at 2116.363 kb on - strand, within ECD_02062at 2117.050 kb on + strandat 2117.362 kb on + strand, within ECD_02063at 2117.556 kb on + strand, within ECD_02063at 2117.625 kb on - strand, within ECD_02063at 2117.771 kb on - strand, within ECD_02063at 2117.771 kb on - strand, within ECD_02063at 2117.771 kb on - strand, within ECD_02063at 2117.882 kb on + strand, within ECD_02063at 2118.015 kb on + strand, within ECD_02063at 2118.496 kb on + strand, within ECD_02063at 2118.506 kb on + strand, within ECD_02063at 2118.544 kb on + strand, within ECD_02063at 2118.565 kb on + strand, within ECD_02063at 2118.565 kb on + strand, within ECD_02063at 2118.565 kb on + strand, within ECD_02063at 2118.641 kb on + strandat 2118.692 kb on - strandat 2118.809 kb on + strandat 2118.844 kb on - strandat 2118.898 kb on + strandat 2118.984 kb on + strand, within ECD_02064at 2118.985 kb on - strand, within ECD_02064at 2119.072 kb on + strand, within ECD_02064at 2119.126 kb on + strand, within ECD_02064at 2119.126 kb on + strand, within ECD_02064at 2119.127 kb on - strand, within ECD_02064at 2119.130 kb on - strand, within ECD_02064

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,116,186 - ECD_02062 0.69 -1.1
2,116,187 + ECD_02062 0.69 +0.2
2,116,188 - ECD_02062 0.69 +0.4
2,116,230 - ECD_02062 0.71 +0.2
2,116,359 - ECD_02062 0.77 -0.5
2,116,359 - ECD_02062 0.77 -0.9
2,116,359 - ECD_02062 0.77 -1.1
2,116,363 - ECD_02062 0.77 +0.1
2,117,050 + +0.5
2,117,362 + ECD_02063 0.16 -0.2
2,117,556 + ECD_02063 0.27 -0.3
2,117,625 - ECD_02063 0.31 -0.2
2,117,771 - ECD_02063 0.40 -2.0
2,117,771 - ECD_02063 0.40 +0.8
2,117,771 - ECD_02063 0.40 +0.2
2,117,882 + ECD_02063 0.46 -0.8
2,118,015 + ECD_02063 0.54 -1.7
2,118,496 + ECD_02063 0.82 -0.8
2,118,506 + ECD_02063 0.83 +0.4
2,118,544 + ECD_02063 0.85 -0.5
2,118,565 + ECD_02063 0.86 -0.9
2,118,565 + ECD_02063 0.86 -0.0
2,118,565 + ECD_02063 0.86 +0.5
2,118,641 + -0.3
2,118,692 - -0.2
2,118,809 + +0.8
2,118,844 - +0.1
2,118,898 + +0.8
2,118,984 + ECD_02064 0.15 -0.2
2,118,985 - ECD_02064 0.15 -0.6
2,119,072 + ECD_02064 0.25 +0.8
2,119,126 + ECD_02064 0.30 +0.0
2,119,126 + ECD_02064 0.30 -0.1
2,119,127 - ECD_02064 0.31 -0.0
2,119,130 - ECD_02064 0.31 +0.6

Or see this region's nucleotide sequence