Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02062 and ECD_02063 are separated by 195 nucleotides ECD_02063 and ECD_02064 are separated by 37 nucleotides
ECD_02062: ECD_02062 - beta-D-glucoside glucohydrolase, periplasmic, at 2,114,596 to 2,116,893
_02062
ECD_02063: ECD_02063 - D-lactate dehydrogenase, FAD-binding, NADH independent, at 2,117,089 to 2,118,804
_02063
ECD_02064: ECD_02064 - D-alanyl-D-alanine endopeptidase, at 2,118,842 to 2,119,774
_02064
Position (kb)
2117
2118
2119 Strain fitness (log2 ratio)
-2
-1
0
1 at 2116.186 kb on - strand, within ECD_02062 at 2116.187 kb on + strand, within ECD_02062 at 2116.188 kb on - strand, within ECD_02062 at 2116.230 kb on - strand, within ECD_02062 at 2116.359 kb on - strand, within ECD_02062 at 2116.359 kb on - strand, within ECD_02062 at 2116.359 kb on - strand, within ECD_02062 at 2116.363 kb on - strand, within ECD_02062 at 2117.050 kb on + strand at 2117.362 kb on + strand, within ECD_02063 at 2117.556 kb on + strand, within ECD_02063 at 2117.625 kb on - strand, within ECD_02063 at 2117.771 kb on - strand, within ECD_02063 at 2117.771 kb on - strand, within ECD_02063 at 2117.771 kb on - strand, within ECD_02063 at 2117.882 kb on + strand, within ECD_02063 at 2118.015 kb on + strand, within ECD_02063 at 2118.496 kb on + strand, within ECD_02063 at 2118.506 kb on + strand, within ECD_02063 at 2118.544 kb on + strand, within ECD_02063 at 2118.565 kb on + strand, within ECD_02063 at 2118.565 kb on + strand, within ECD_02063 at 2118.565 kb on + strand, within ECD_02063 at 2118.641 kb on + strand at 2118.692 kb on - strand at 2118.809 kb on + strand at 2118.844 kb on - strand at 2118.898 kb on + strand at 2118.984 kb on + strand, within ECD_02064 at 2118.985 kb on - strand, within ECD_02064 at 2119.072 kb on + strand, within ECD_02064 at 2119.126 kb on + strand, within ECD_02064 at 2119.126 kb on + strand, within ECD_02064 at 2119.127 kb on - strand, within ECD_02064 at 2119.130 kb on - strand, within ECD_02064
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 2,116,186 - ECD_02062 0.69 -1.1 2,116,187 + ECD_02062 0.69 +0.2 2,116,188 - ECD_02062 0.69 +0.4 2,116,230 - ECD_02062 0.71 +0.2 2,116,359 - ECD_02062 0.77 -0.5 2,116,359 - ECD_02062 0.77 -0.9 2,116,359 - ECD_02062 0.77 -1.1 2,116,363 - ECD_02062 0.77 +0.1 2,117,050 + +0.5 2,117,362 + ECD_02063 0.16 -0.2 2,117,556 + ECD_02063 0.27 -0.3 2,117,625 - ECD_02063 0.31 -0.2 2,117,771 - ECD_02063 0.40 -2.0 2,117,771 - ECD_02063 0.40 +0.8 2,117,771 - ECD_02063 0.40 +0.2 2,117,882 + ECD_02063 0.46 -0.8 2,118,015 + ECD_02063 0.54 -1.7 2,118,496 + ECD_02063 0.82 -0.8 2,118,506 + ECD_02063 0.83 +0.4 2,118,544 + ECD_02063 0.85 -0.5 2,118,565 + ECD_02063 0.86 -0.9 2,118,565 + ECD_02063 0.86 -0.0 2,118,565 + ECD_02063 0.86 +0.5 2,118,641 + -0.3 2,118,692 - -0.2 2,118,809 + +0.8 2,118,844 - +0.1 2,118,898 + +0.8 2,118,984 + ECD_02064 0.15 -0.2 2,118,985 - ECD_02064 0.15 -0.6 2,119,072 + ECD_02064 0.25 +0.8 2,119,126 + ECD_02064 0.30 +0.0 2,119,126 + ECD_02064 0.30 -0.1 2,119,127 - ECD_02064 0.31 -0.0 2,119,130 - ECD_02064 0.31 +0.6
Or see this region's nucleotide sequence