Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01440 and ECD_01441 are separated by 55 nucleotides ECD_01441 and ECD_01442 overlap by 8 nucleotides ECD_01442 and ECD_01443 overlap by 4 nucleotides ECD_01443 and ECD_01444 overlap by 4 nucleotides
ECD_01440: ECD_01440 - lipoyl-dependent Cys-based peroxidase, hydroperoxide resistance; salt-shock inducible membrane protein; peroxiredoxin, at 1,512,093 to 1,512,524
_01440
ECD_01441: ECD_01441 - D,D-dipeptide ABC transporter ATPase, at 1,512,580 to 1,513,506
_01441
ECD_01442: ECD_01442 - D,D-dipeptide ABC transporter ATPase, at 1,513,499 to 1,514,485
_01442
ECD_01443: ECD_01443 - D,D-dipeptide ABC transporter permease, at 1,514,482 to 1,515,378
_01443
ECD_01444: ECD_01444 - D,D-dipeptide ABC transporter permease, at 1,515,375 to 1,516,397
_01444
Position (kb) 1513
1514
1515 Strain fitness (log2 ratio) -1
0
1
2 at 1512.629 kb on - strand at 1512.794 kb on + strand, within ECD_01441 at 1513.180 kb on + strand, within ECD_01441 at 1513.290 kb on - strand, within ECD_01441 at 1513.508 kb on + strand at 1513.606 kb on - strand, within ECD_01442 at 1513.730 kb on - strand, within ECD_01442 at 1514.111 kb on + strand, within ECD_01442 at 1514.868 kb on - strand, within ECD_01443 at 1514.886 kb on + strand, within ECD_01443 at 1514.974 kb on - strand, within ECD_01443 at 1515.254 kb on - strand, within ECD_01443 at 1515.419 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,512,629 - -0.9 1,512,794 + ECD_01441 0.23 +0.1 1,513,180 + ECD_01441 0.65 +0.0 1,513,290 - ECD_01441 0.77 -1.7 1,513,508 + +2.1 1,513,606 - ECD_01442 0.11 -0.2 1,513,730 - ECD_01442 0.23 -1.7 1,514,111 + ECD_01442 0.62 +0.4 1,514,868 - ECD_01443 0.43 -1.0 1,514,886 + ECD_01443 0.45 -0.3 1,514,974 - ECD_01443 0.55 -0.1 1,515,254 - ECD_01443 0.86 -0.5 1,515,419 - -0.4
Or see this region's nucleotide sequence