Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00839 and ECD_00840 overlap by 59 nucleotides ECD_00840 and ECD_00841 overlap by 140 nucleotides ECD_00841 and ECD_00842 overlap by 4 nucleotides ECD_00842 and ECD_00843 overlap by 14 nucleotides
ECD_00839: ECD_00839 - putative phage tail protein, at 884,726 to 885,172
_00839
ECD_00840: ECD_00840 - hypothetical protein, at 885,114 to 885,920
_00840
ECD_00841: ECD_00841 - hypothetical protein, at 885,781 to 886,602
_00841
ECD_00842: ECD_00842 - phage baseplate assembly protein, at 886,599 to 886,958
_00842
ECD_00843: ECD_00843 - phage baseplate assembly protein, at 886,945 to 887,853
_00843
Position (kb) 885
886
887 Strain fitness (log2 ratio) -1
0
1 at 884.964 kb on - strand, within ECD_00839 at 886.017 kb on + strand, within ECD_00841 at 886.017 kb on + strand, within ECD_00841 at 886.017 kb on + strand, within ECD_00841 at 886.023 kb on + strand, within ECD_00841 at 886.076 kb on + strand, within ECD_00841 at 886.082 kb on + strand, within ECD_00841 at 886.082 kb on + strand, within ECD_00841 at 886.274 kb on - strand, within ECD_00841 at 886.375 kb on + strand, within ECD_00841 at 886.471 kb on - strand, within ECD_00841 at 886.625 kb on + strand at 886.798 kb on - strand, within ECD_00842 at 886.798 kb on - strand, within ECD_00842 at 887.230 kb on + strand, within ECD_00843 at 887.230 kb on + strand, within ECD_00843 at 887.230 kb on + strand, within ECD_00843 at 887.231 kb on - strand, within ECD_00843 at 887.231 kb on - strand, within ECD_00843
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 884,964 - ECD_00839 0.53 +0.9 886,017 + ECD_00841 0.29 +0.4 886,017 + ECD_00841 0.29 +0.2 886,017 + ECD_00841 0.29 +0.2 886,023 + ECD_00841 0.29 +0.3 886,076 + ECD_00841 0.36 -0.3 886,082 + ECD_00841 0.37 +0.7 886,082 + ECD_00841 0.37 -0.1 886,274 - ECD_00841 0.60 +0.1 886,375 + ECD_00841 0.72 -0.3 886,471 - ECD_00841 0.84 +0.1 886,625 + +0.3 886,798 - ECD_00842 0.55 +0.3 886,798 - ECD_00842 0.55 -0.1 887,230 + ECD_00843 0.31 -0.8 887,230 + ECD_00843 0.31 +0.5 887,230 + ECD_00843 0.31 +0.2 887,231 - ECD_00843 0.31 +0.6 887,231 - ECD_00843 0.31 -0.0
Or see this region's nucleotide sequence