Strain Fitness in Escherichia coli BL21 around ECD_04232

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04230 and ECD_04231 are separated by 271 nucleotidesECD_04231 and ECD_04232 are separated by 118 nucleotidesECD_04232 and ECD_04233 are separated by 48 nucleotides ECD_04230: ECD_04230 - 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, at 4,507,907 to 4,509,196 _04230 ECD_04231: ECD_04231 - Homoprotocatechuate degradative operon repressor, at 4,509,468 to 4,509,914 _04231 ECD_04232: ECD_04232 - methyl-accepting chemotaxis protein I, serine sensor receptor, at 4,510,033 to 4,511,688 _04232 ECD_04233: ECD_04233 - putative L-galactonate:H+ symporter, at 4,511,737 to 4,513,098 _04233 Position (kb) 4510 4511 4512Strain fitness (log2 ratio) -3 -2 -1 0 1at 4509.080 kb on - strandat 4509.083 kb on - strandat 4509.729 kb on + strand, within ECD_04231at 4509.731 kb on + strand, within ECD_04231at 4509.731 kb on + strand, within ECD_04231at 4509.731 kb on + strand, within ECD_04231at 4509.762 kb on + strand, within ECD_04231at 4509.864 kb on - strand, within ECD_04231at 4509.964 kb on + strandat 4510.038 kb on - strandat 4510.045 kb on - strandat 4510.065 kb on - strandat 4510.094 kb on + strandat 4510.095 kb on - strandat 4510.225 kb on - strand, within ECD_04232at 4510.252 kb on + strand, within ECD_04232at 4510.253 kb on - strand, within ECD_04232at 4510.269 kb on + strand, within ECD_04232at 4510.272 kb on + strand, within ECD_04232at 4510.318 kb on - strand, within ECD_04232at 4510.354 kb on + strand, within ECD_04232at 4510.413 kb on + strand, within ECD_04232at 4510.413 kb on + strand, within ECD_04232at 4510.414 kb on - strand, within ECD_04232at 4510.417 kb on + strand, within ECD_04232at 4510.422 kb on + strand, within ECD_04232at 4510.426 kb on + strand, within ECD_04232at 4510.460 kb on + strand, within ECD_04232at 4510.531 kb on + strand, within ECD_04232at 4510.531 kb on + strand, within ECD_04232at 4510.532 kb on - strand, within ECD_04232at 4510.540 kb on + strand, within ECD_04232at 4510.540 kb on + strand, within ECD_04232at 4510.541 kb on - strand, within ECD_04232at 4510.541 kb on - strand, within ECD_04232at 4510.565 kb on - strand, within ECD_04232at 4510.725 kb on + strand, within ECD_04232at 4510.726 kb on - strand, within ECD_04232at 4510.806 kb on + strand, within ECD_04232at 4510.864 kb on + strand, within ECD_04232at 4510.864 kb on + strand, within ECD_04232at 4510.864 kb on + strand, within ECD_04232at 4510.864 kb on + strand, within ECD_04232at 4510.864 kb on + strand, within ECD_04232at 4510.864 kb on + strand, within ECD_04232at 4511.122 kb on - strand, within ECD_04232at 4511.125 kb on - strand, within ECD_04232at 4511.284 kb on - strand, within ECD_04232at 4511.398 kb on - strand, within ECD_04232at 4511.687 kb on - strandat 4511.730 kb on - strandat 4511.784 kb on - strandat 4511.784 kb on - strandat 4511.784 kb on - strandat 4511.859 kb on + strandat 4511.859 kb on + strandat 4511.860 kb on - strandat 4512.056 kb on - strand, within ECD_04233at 4512.056 kb on - strand, within ECD_04233at 4512.056 kb on - strand, within ECD_04233at 4512.105 kb on + strand, within ECD_04233at 4512.155 kb on + strand, within ECD_04233at 4512.235 kb on - strand, within ECD_04233at 4512.236 kb on + strand, within ECD_04233at 4512.236 kb on + strand, within ECD_04233at 4512.287 kb on + strand, within ECD_04233at 4512.288 kb on - strand, within ECD_04233at 4512.391 kb on - strand, within ECD_04233at 4512.405 kb on - strand, within ECD_04233at 4512.431 kb on - strand, within ECD_04233at 4512.431 kb on - strand, within ECD_04233at 4512.431 kb on - strand, within ECD_04233at 4512.456 kb on + strand, within ECD_04233at 4512.456 kb on + strand, within ECD_04233at 4512.456 kb on + strand, within ECD_04233at 4512.456 kb on + strand, within ECD_04233at 4512.457 kb on - strand, within ECD_04233at 4512.457 kb on - strand, within ECD_04233at 4512.457 kb on - strand, within ECD_04233at 4512.457 kb on - strand, within ECD_04233at 4512.458 kb on + strand, within ECD_04233at 4512.458 kb on + strand, within ECD_04233at 4512.458 kb on + strand, within ECD_04233at 4512.458 kb on + strand, within ECD_04233at 4512.459 kb on - strand, within ECD_04233at 4512.459 kb on - strand, within ECD_04233at 4512.488 kb on - strand, within ECD_04233at 4512.499 kb on - strand, within ECD_04233at 4512.501 kb on + strand, within ECD_04233at 4512.501 kb on + strand, within ECD_04233at 4512.502 kb on - strand, within ECD_04233at 4512.502 kb on - strand, within ECD_04233at 4512.573 kb on + strand, within ECD_04233at 4512.574 kb on - strand, within ECD_04233

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,509,080 - -0.1
4,509,083 - -0.7
4,509,729 + ECD_04231 0.58 +0.6
4,509,731 + ECD_04231 0.59 -1.3
4,509,731 + ECD_04231 0.59 +0.1
4,509,731 + ECD_04231 0.59 -0.0
4,509,762 + ECD_04231 0.66 +0.3
4,509,864 - ECD_04231 0.89 +0.6
4,509,964 + -0.9
4,510,038 - +0.4
4,510,045 - +0.2
4,510,065 - -2.1
4,510,094 + +0.5
4,510,095 - +0.9
4,510,225 - ECD_04232 0.12 -0.1
4,510,252 + ECD_04232 0.13 +0.9
4,510,253 - ECD_04232 0.13 +0.1
4,510,269 + ECD_04232 0.14 +0.2
4,510,272 + ECD_04232 0.14 +0.2
4,510,318 - ECD_04232 0.17 +0.3
4,510,354 + ECD_04232 0.19 -3.2
4,510,413 + ECD_04232 0.23 +0.5
4,510,413 + ECD_04232 0.23 +0.5
4,510,414 - ECD_04232 0.23 -0.4
4,510,417 + ECD_04232 0.23 +0.2
4,510,422 + ECD_04232 0.23 -0.1
4,510,426 + ECD_04232 0.24 +0.8
4,510,460 + ECD_04232 0.26 -0.3
4,510,531 + ECD_04232 0.30 -0.2
4,510,531 + ECD_04232 0.30 -0.5
4,510,532 - ECD_04232 0.30 +0.1
4,510,540 + ECD_04232 0.31 +0.8
4,510,540 + ECD_04232 0.31 -0.3
4,510,541 - ECD_04232 0.31 +0.1
4,510,541 - ECD_04232 0.31 +0.2
4,510,565 - ECD_04232 0.32 -0.4
4,510,725 + ECD_04232 0.42 -1.8
4,510,726 - ECD_04232 0.42 +1.1
4,510,806 + ECD_04232 0.47 -0.2
4,510,864 + ECD_04232 0.50 -1.0
4,510,864 + ECD_04232 0.50 +0.3
4,510,864 + ECD_04232 0.50 +0.4
4,510,864 + ECD_04232 0.50 +0.3
4,510,864 + ECD_04232 0.50 +1.7
4,510,864 + ECD_04232 0.50 -0.3
4,511,122 - ECD_04232 0.66 -0.0
4,511,125 - ECD_04232 0.66 +0.6
4,511,284 - ECD_04232 0.76 -0.4
4,511,398 - ECD_04232 0.82 +0.3
4,511,687 - -0.7
4,511,730 - -1.0
4,511,784 - +0.5
4,511,784 - +1.4
4,511,784 - +1.1
4,511,859 + +0.1
4,511,859 + +1.5
4,511,860 - +0.9
4,512,056 - ECD_04233 0.23 -0.4
4,512,056 - ECD_04233 0.23 +0.8
4,512,056 - ECD_04233 0.23 +0.2
4,512,105 + ECD_04233 0.27 +0.7
4,512,155 + ECD_04233 0.31 -0.3
4,512,235 - ECD_04233 0.37 +0.0
4,512,236 + ECD_04233 0.37 -1.6
4,512,236 + ECD_04233 0.37 -0.1
4,512,287 + ECD_04233 0.40 -2.2
4,512,288 - ECD_04233 0.40 -0.2
4,512,391 - ECD_04233 0.48 +0.0
4,512,405 - ECD_04233 0.49 +0.0
4,512,431 - ECD_04233 0.51 +0.9
4,512,431 - ECD_04233 0.51 +0.9
4,512,431 - ECD_04233 0.51 -0.7
4,512,456 + ECD_04233 0.53 -0.7
4,512,456 + ECD_04233 0.53 -0.4
4,512,456 + ECD_04233 0.53 +0.2
4,512,456 + ECD_04233 0.53 +0.4
4,512,457 - ECD_04233 0.53 +0.1
4,512,457 - ECD_04233 0.53 +1.6
4,512,457 - ECD_04233 0.53 +0.2
4,512,457 - ECD_04233 0.53 -0.1
4,512,458 + ECD_04233 0.53 -0.3
4,512,458 + ECD_04233 0.53 +0.5
4,512,458 + ECD_04233 0.53 +0.1
4,512,458 + ECD_04233 0.53 +1.3
4,512,459 - ECD_04233 0.53 +0.8
4,512,459 - ECD_04233 0.53 -0.3
4,512,488 - ECD_04233 0.55 +0.6
4,512,499 - ECD_04233 0.56 +0.3
4,512,501 + ECD_04233 0.56 -0.5
4,512,501 + ECD_04233 0.56 -1.6
4,512,502 - ECD_04233 0.56 -0.1
4,512,502 - ECD_04233 0.56 +0.7
4,512,573 + ECD_04233 0.61 -0.5
4,512,574 - ECD_04233 0.61 -1.0

Or see this region's nucleotide sequence