Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04193 and ECD_04194 are separated by 140 nucleotides ECD_04194 and ECD_04195 are separated by 672 nucleotides
ECD_04193: ECD_04193 - fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor, at 4,463,855 to 4,464,628
_04193
ECD_04194: ECD_04194 - uncharacterized protein, at 4,464,769 to 4,465,599
_04194
ECD_04195: ECD_04195 - RpoS stabilzer after DNA damage, anti-RssB factor, at 4,466,272 to 4,466,664
_04195
Position (kb)
4464
4465
4466 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4464.068 kb on + strand, within ECD_04193 at 4464.068 kb on + strand, within ECD_04193 at 4464.069 kb on - strand, within ECD_04193 at 4464.882 kb on + strand, within ECD_04194 at 4464.974 kb on - strand, within ECD_04194 at 4465.108 kb on + strand, within ECD_04194 at 4466.170 kb on + strand at 4466.170 kb on + strand at 4466.171 kb on - strand at 4466.210 kb on + strand at 4466.243 kb on + strand at 4466.244 kb on - strand at 4466.244 kb on - strand at 4466.319 kb on + strand, within ECD_04195 at 4466.371 kb on - strand, within ECD_04195 at 4466.399 kb on + strand, within ECD_04195 at 4466.400 kb on - strand, within ECD_04195 at 4466.493 kb on - strand, within ECD_04195 at 4466.581 kb on + strand, within ECD_04195
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,464,068 + ECD_04193 0.28 -0.7 4,464,068 + ECD_04193 0.28 +0.6 4,464,069 - ECD_04193 0.28 -0.5 4,464,882 + ECD_04194 0.14 +1.3 4,464,974 - ECD_04194 0.25 +1.1 4,465,108 + ECD_04194 0.41 -0.1 4,466,170 + +2.5 4,466,170 + +0.4 4,466,171 - +0.0 4,466,210 + +0.6 4,466,243 + +0.0 4,466,244 - -0.1 4,466,244 - -0.0 4,466,319 + ECD_04195 0.12 -0.8 4,466,371 - ECD_04195 0.25 -2.1 4,466,399 + ECD_04195 0.32 +0.9 4,466,400 - ECD_04195 0.33 +0.3 4,466,493 - ECD_04195 0.56 -0.3 4,466,581 + ECD_04195 0.79 +0.5
Or see this region's nucleotide sequence