Strain Fitness in Escherichia coli BL21 around ECD_03866

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03865 and ECD_03866 are separated by 409 nucleotidesECD_03866 and ECD_03867 overlap by 4 nucleotidesECD_03867 and ECD_03868 are separated by 1 nucleotidesECD_03868 and ECD_03869 overlap by 17 nucleotides ECD_03865: ECD_03865 - stationary phase growth adaptation protein, at 4,097,837 to 4,098,376 _03865 ECD_03866: ECD_03866 - tyrosine lyase, involved in thiamine-thiazole moiety synthesis, at 4,098,786 to 4,099,919 _03866 ECD_03867: ECD_03867 - thiamine biosynthesis ThiGH complex subunit, at 4,099,916 to 4,100,686 _03867 ECD_03868: ECD_03868 - immediate sulfur donor in thiazole formation, at 4,100,688 to 4,100,888 _03868 ECD_03869: ECD_03869 - adenylyltransferase, modifies ThiS C-terminus, at 4,100,872 to 4,101,627 _03869 Position (kb) 4098 4099 4100Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4097.806 kb on + strandat 4097.888 kb on - strandat 4097.898 kb on + strand, within ECD_03865at 4097.898 kb on + strand, within ECD_03865at 4097.927 kb on + strand, within ECD_03865at 4097.928 kb on - strand, within ECD_03865at 4097.928 kb on - strand, within ECD_03865at 4097.959 kb on - strand, within ECD_03865at 4097.981 kb on + strand, within ECD_03865at 4097.982 kb on - strand, within ECD_03865at 4097.982 kb on - strand, within ECD_03865at 4098.090 kb on - strand, within ECD_03865at 4098.091 kb on + strand, within ECD_03865at 4098.092 kb on - strand, within ECD_03865at 4098.092 kb on - strand, within ECD_03865at 4098.092 kb on - strand, within ECD_03865at 4098.166 kb on + strand, within ECD_03865at 4098.166 kb on + strand, within ECD_03865at 4098.166 kb on + strand, within ECD_03865at 4098.167 kb on - strand, within ECD_03865at 4098.167 kb on - strand, within ECD_03865at 4098.167 kb on - strand, within ECD_03865at 4098.170 kb on + strand, within ECD_03865at 4098.170 kb on + strand, within ECD_03865at 4098.171 kb on - strand, within ECD_03865at 4098.171 kb on - strand, within ECD_03865at 4098.171 kb on - strand, within ECD_03865at 4098.171 kb on - strand, within ECD_03865at 4098.192 kb on + strand, within ECD_03865at 4098.193 kb on - strand, within ECD_03865at 4098.193 kb on - strand, within ECD_03865at 4098.206 kb on - strand, within ECD_03865at 4098.268 kb on - strand, within ECD_03865at 4098.268 kb on - strand, within ECD_03865at 4098.268 kb on - strand, within ECD_03865at 4098.271 kb on + strand, within ECD_03865at 4098.272 kb on - strand, within ECD_03865at 4098.304 kb on + strand, within ECD_03865at 4098.349 kb on + strandat 4098.389 kb on + strandat 4098.413 kb on - strandat 4098.422 kb on - strandat 4098.533 kb on - strandat 4098.549 kb on + strandat 4098.550 kb on - strandat 4098.550 kb on - strandat 4098.550 kb on - strandat 4098.570 kb on - strandat 4098.570 kb on - strandat 4098.632 kb on + strandat 4098.775 kb on + strandat 4098.775 kb on + strandat 4098.776 kb on - strandat 4098.776 kb on - strandat 4098.776 kb on - strandat 4099.080 kb on + strand, within ECD_03866at 4099.124 kb on + strand, within ECD_03866at 4099.125 kb on - strand, within ECD_03866at 4099.189 kb on - strand, within ECD_03866at 4099.208 kb on + strand, within ECD_03866at 4099.208 kb on + strand, within ECD_03866at 4099.208 kb on + strand, within ECD_03866at 4099.209 kb on - strand, within ECD_03866at 4099.210 kb on + strand, within ECD_03866at 4099.210 kb on + strand, within ECD_03866at 4099.210 kb on + strand, within ECD_03866at 4099.210 kb on + strand, within ECD_03866at 4099.210 kb on + strand, within ECD_03866at 4099.210 kb on + strand, within ECD_03866at 4099.210 kb on + strand, within ECD_03866at 4099.211 kb on - strand, within ECD_03866at 4099.211 kb on - strand, within ECD_03866at 4099.211 kb on - strand, within ECD_03866at 4099.211 kb on - strand, within ECD_03866at 4099.260 kb on + strand, within ECD_03866at 4099.265 kb on + strand, within ECD_03866at 4099.266 kb on - strand, within ECD_03866at 4099.351 kb on + strand, within ECD_03866at 4099.352 kb on - strand, within ECD_03866at 4099.366 kb on + strand, within ECD_03866at 4099.366 kb on + strand, within ECD_03866at 4099.367 kb on - strand, within ECD_03866at 4099.367 kb on - strand, within ECD_03866at 4099.367 kb on - strand, within ECD_03866at 4099.367 kb on - strand, within ECD_03866at 4099.367 kb on - strand, within ECD_03866at 4099.367 kb on - strand, within ECD_03866at 4099.367 kb on - strand, within ECD_03866at 4099.367 kb on - strand, within ECD_03866at 4099.379 kb on - strand, within ECD_03866at 4099.410 kb on + strand, within ECD_03866at 4099.501 kb on + strand, within ECD_03866at 4099.539 kb on + strand, within ECD_03866at 4099.542 kb on + strand, within ECD_03866at 4099.543 kb on - strand, within ECD_03866at 4099.543 kb on - strand, within ECD_03866at 4099.543 kb on - strand, within ECD_03866at 4099.571 kb on + strand, within ECD_03866at 4099.572 kb on - strand, within ECD_03866at 4099.628 kb on + strand, within ECD_03866at 4099.648 kb on + strand, within ECD_03866at 4099.648 kb on + strand, within ECD_03866at 4099.681 kb on + strand, within ECD_03866at 4099.681 kb on + strand, within ECD_03866at 4099.693 kb on + strand, within ECD_03866at 4099.700 kb on + strand, within ECD_03866at 4099.701 kb on - strand, within ECD_03866at 4099.837 kb on - strandat 4099.837 kb on - strandat 4100.302 kb on - strand, within ECD_03867at 4100.327 kb on + strand, within ECD_03867at 4100.328 kb on - strand, within ECD_03867at 4100.678 kb on - strandat 4100.678 kb on - strandat 4100.682 kb on - strandat 4100.741 kb on + strand, within ECD_03868at 4100.741 kb on + strand, within ECD_03868at 4100.742 kb on - strand, within ECD_03868at 4100.826 kb on + strand, within ECD_03868

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,097,806 + +0.0
4,097,888 - -0.3
4,097,898 + ECD_03865 0.11 +0.4
4,097,898 + ECD_03865 0.11 -1.1
4,097,927 + ECD_03865 0.17 +1.0
4,097,928 - ECD_03865 0.17 +0.5
4,097,928 - ECD_03865 0.17 -0.5
4,097,959 - ECD_03865 0.23 +0.8
4,097,981 + ECD_03865 0.27 +0.7
4,097,982 - ECD_03865 0.27 +1.1
4,097,982 - ECD_03865 0.27 +0.7
4,098,090 - ECD_03865 0.47 +1.8
4,098,091 + ECD_03865 0.47 +0.2
4,098,092 - ECD_03865 0.47 +0.4
4,098,092 - ECD_03865 0.47 +0.3
4,098,092 - ECD_03865 0.47 -0.1
4,098,166 + ECD_03865 0.61 +0.3
4,098,166 + ECD_03865 0.61 -0.0
4,098,166 + ECD_03865 0.61 +0.7
4,098,167 - ECD_03865 0.61 +1.4
4,098,167 - ECD_03865 0.61 +0.6
4,098,167 - ECD_03865 0.61 +0.4
4,098,170 + ECD_03865 0.62 +0.8
4,098,170 + ECD_03865 0.62 +0.3
4,098,171 - ECD_03865 0.62 +0.5
4,098,171 - ECD_03865 0.62 -0.3
4,098,171 - ECD_03865 0.62 -0.8
4,098,171 - ECD_03865 0.62 +0.8
4,098,192 + ECD_03865 0.66 +0.3
4,098,193 - ECD_03865 0.66 +0.0
4,098,193 - ECD_03865 0.66 -0.2
4,098,206 - ECD_03865 0.68 -2.3
4,098,268 - ECD_03865 0.80 +1.2
4,098,268 - ECD_03865 0.80 -1.2
4,098,268 - ECD_03865 0.80 +0.7
4,098,271 + ECD_03865 0.80 -0.2
4,098,272 - ECD_03865 0.81 +0.0
4,098,304 + ECD_03865 0.86 +0.1
4,098,349 + -0.3
4,098,389 + +1.2
4,098,413 - +0.8
4,098,422 - +0.2
4,098,533 - +1.5
4,098,549 + +0.1
4,098,550 - +0.4
4,098,550 - -0.7
4,098,550 - +0.1
4,098,570 - +0.1
4,098,570 - -0.0
4,098,632 + +1.2
4,098,775 + -0.0
4,098,775 + +0.7
4,098,776 - -0.2
4,098,776 - +0.7
4,098,776 - +0.0
4,099,080 + ECD_03866 0.26 -1.3
4,099,124 + ECD_03866 0.30 -0.5
4,099,125 - ECD_03866 0.30 -0.9
4,099,189 - ECD_03866 0.36 -0.5
4,099,208 + ECD_03866 0.37 -1.3
4,099,208 + ECD_03866 0.37 -0.6
4,099,208 + ECD_03866 0.37 +0.3
4,099,209 - ECD_03866 0.37 -1.2
4,099,210 + ECD_03866 0.37 -0.2
4,099,210 + ECD_03866 0.37 -1.9
4,099,210 + ECD_03866 0.37 -1.1
4,099,210 + ECD_03866 0.37 -0.1
4,099,210 + ECD_03866 0.37 -0.6
4,099,210 + ECD_03866 0.37 -3.6
4,099,210 + ECD_03866 0.37 -0.2
4,099,211 - ECD_03866 0.37 -0.6
4,099,211 - ECD_03866 0.37 -0.2
4,099,211 - ECD_03866 0.37 +1.0
4,099,211 - ECD_03866 0.37 -0.7
4,099,260 + ECD_03866 0.42 -1.1
4,099,265 + ECD_03866 0.42 -1.6
4,099,266 - ECD_03866 0.42 -0.1
4,099,351 + ECD_03866 0.50 -0.3
4,099,352 - ECD_03866 0.50 -0.8
4,099,366 + ECD_03866 0.51 +0.3
4,099,366 + ECD_03866 0.51 -1.1
4,099,367 - ECD_03866 0.51 -0.8
4,099,367 - ECD_03866 0.51 -0.2
4,099,367 - ECD_03866 0.51 -0.9
4,099,367 - ECD_03866 0.51 -1.2
4,099,367 - ECD_03866 0.51 -1.4
4,099,367 - ECD_03866 0.51 -1.3
4,099,367 - ECD_03866 0.51 -0.1
4,099,367 - ECD_03866 0.51 -0.6
4,099,379 - ECD_03866 0.52 -0.3
4,099,410 + ECD_03866 0.55 -1.9
4,099,501 + ECD_03866 0.63 -0.6
4,099,539 + ECD_03866 0.66 -0.6
4,099,542 + ECD_03866 0.67 -0.5
4,099,543 - ECD_03866 0.67 +0.6
4,099,543 - ECD_03866 0.67 -0.1
4,099,543 - ECD_03866 0.67 -1.3
4,099,571 + ECD_03866 0.69 +0.1
4,099,572 - ECD_03866 0.69 -2.0
4,099,628 + ECD_03866 0.74 -0.2
4,099,648 + ECD_03866 0.76 -1.2
4,099,648 + ECD_03866 0.76 +1.1
4,099,681 + ECD_03866 0.79 -0.2
4,099,681 + ECD_03866 0.79 +0.3
4,099,693 + ECD_03866 0.80 -0.6
4,099,700 + ECD_03866 0.81 -0.3
4,099,701 - ECD_03866 0.81 +0.1
4,099,837 - +0.2
4,099,837 - +0.1
4,100,302 - ECD_03867 0.50 +0.0
4,100,327 + ECD_03867 0.53 -1.1
4,100,328 - ECD_03867 0.53 +0.6
4,100,678 - -0.8
4,100,678 - -1.3
4,100,682 - -0.8
4,100,741 + ECD_03868 0.26 -0.2
4,100,741 + ECD_03868 0.26 +0.4
4,100,742 - ECD_03868 0.27 -2.0
4,100,826 + ECD_03868 0.69 -0.0

Or see this region's nucleotide sequence