Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03841 and ECD_03842 are separated by 351 nucleotides ECD_03842 and ECD_03843 are separated by 153 nucleotides
ECD_03841: ECD_03841 - phosphoenolpyruvate carboxylase, at 4,058,994 to 4,061,645
_03841
ECD_03842: ECD_03842 - acetylornithine deacetylase, at 4,061,997 to 4,063,148
_03842
ECD_03843: ECD_03843 - N-acetyl-gamma-glutamylphosphate reductase, NAD(P)-binding, at 4,063,302 to 4,064,306
_03843
Position (kb)
4061
4062
4063
4064 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 4061.049 kb on + strand, within ECD_03841 at 4061.050 kb on - strand, within ECD_03841 at 4061.084 kb on + strand, within ECD_03841 at 4061.141 kb on - strand, within ECD_03841 at 4061.150 kb on + strand, within ECD_03841 at 4061.151 kb on - strand, within ECD_03841 at 4061.211 kb on - strand, within ECD_03841 at 4061.219 kb on + strand, within ECD_03841 at 4061.318 kb on + strand, within ECD_03841 at 4061.319 kb on - strand, within ECD_03841 at 4061.528 kb on + strand at 4061.528 kb on + strand at 4061.529 kb on - strand at 4061.529 kb on - strand at 4061.606 kb on + strand at 4061.606 kb on + strand at 4061.607 kb on - strand at 4061.607 kb on - strand at 4061.607 kb on - strand at 4061.607 kb on - strand at 4061.616 kb on - strand at 4061.618 kb on + strand at 4061.618 kb on + strand at 4061.619 kb on - strand at 4061.619 kb on - strand at 4061.634 kb on - strand at 4061.645 kb on + strand at 4061.645 kb on + strand at 4061.668 kb on - strand at 4061.668 kb on - strand at 4061.678 kb on - strand at 4061.678 kb on - strand at 4061.686 kb on - strand at 4061.712 kb on - strand at 4061.742 kb on - strand at 4061.799 kb on + strand at 4061.804 kb on - strand at 4061.823 kb on - strand at 4061.839 kb on - strand at 4061.842 kb on + strand at 4061.849 kb on - strand at 4061.849 kb on - strand at 4061.853 kb on + strand at 4061.877 kb on + strand at 4061.877 kb on + strand at 4061.881 kb on + strand at 4061.881 kb on + strand at 4061.881 kb on + strand at 4061.904 kb on + strand at 4061.932 kb on + strand at 4061.933 kb on - strand at 4061.999 kb on - strand at 4062.021 kb on + strand at 4062.050 kb on + strand at 4062.050 kb on + strand at 4062.051 kb on - strand at 4062.051 kb on - strand at 4062.140 kb on + strand, within ECD_03842 at 4062.160 kb on + strand, within ECD_03842 at 4062.160 kb on + strand, within ECD_03842 at 4062.161 kb on - strand, within ECD_03842 at 4062.161 kb on - strand, within ECD_03842 at 4062.161 kb on - strand, within ECD_03842 at 4062.161 kb on - strand, within ECD_03842 at 4062.235 kb on + strand, within ECD_03842 at 4062.236 kb on - strand, within ECD_03842 at 4062.326 kb on + strand, within ECD_03842 at 4062.327 kb on - strand, within ECD_03842 at 4062.368 kb on + strand, within ECD_03842 at 4062.368 kb on + strand, within ECD_03842 at 4062.368 kb on + strand, within ECD_03842 at 4062.369 kb on - strand, within ECD_03842 at 4062.392 kb on + strand, within ECD_03842 at 4062.393 kb on - strand, within ECD_03842 at 4062.398 kb on + strand, within ECD_03842 at 4062.398 kb on + strand, within ECD_03842 at 4062.419 kb on + strand, within ECD_03842 at 4062.420 kb on - strand, within ECD_03842 at 4062.437 kb on + strand, within ECD_03842 at 4062.438 kb on - strand, within ECD_03842 at 4062.469 kb on + strand, within ECD_03842 at 4062.503 kb on + strand, within ECD_03842 at 4062.504 kb on - strand, within ECD_03842 at 4062.504 kb on - strand, within ECD_03842 at 4062.525 kb on + strand, within ECD_03842 at 4062.525 kb on + strand, within ECD_03842 at 4062.525 kb on + strand, within ECD_03842 at 4062.526 kb on - strand, within ECD_03842 at 4062.526 kb on - strand, within ECD_03842 at 4062.540 kb on - strand, within ECD_03842 at 4062.602 kb on + strand, within ECD_03842 at 4062.602 kb on + strand, within ECD_03842 at 4062.602 kb on + strand, within ECD_03842 at 4062.603 kb on - strand, within ECD_03842 at 4062.603 kb on - strand, within ECD_03842 at 4062.603 kb on - strand, within ECD_03842 at 4062.611 kb on + strand, within ECD_03842 at 4062.611 kb on + strand, within ECD_03842 at 4062.611 kb on + strand, within ECD_03842 at 4062.611 kb on + strand, within ECD_03842 at 4062.611 kb on + strand, within ECD_03842 at 4062.612 kb on - strand, within ECD_03842 at 4062.612 kb on - strand, within ECD_03842 at 4062.612 kb on - strand, within ECD_03842 at 4062.612 kb on - strand, within ECD_03842 at 4062.612 kb on - strand, within ECD_03842 at 4062.630 kb on + strand, within ECD_03842 at 4062.691 kb on + strand, within ECD_03842 at 4062.739 kb on + strand, within ECD_03842 at 4062.740 kb on - strand, within ECD_03842 at 4062.908 kb on + strand, within ECD_03842 at 4062.908 kb on + strand, within ECD_03842 at 4062.909 kb on - strand, within ECD_03842 at 4062.909 kb on - strand, within ECD_03842 at 4062.960 kb on - strand, within ECD_03842 at 4063.045 kb on - strand at 4063.087 kb on - strand at 4063.225 kb on + strand at 4063.259 kb on - strand at 4063.259 kb on - strand at 4063.282 kb on + strand at 4063.282 kb on + strand at 4063.282 kb on + strand at 4063.282 kb on + strand at 4063.282 kb on + strand at 4063.282 kb on + strand at 4063.282 kb on + strand at 4063.282 kb on + strand at 4063.283 kb on - strand at 4063.283 kb on - strand at 4063.283 kb on - strand at 4063.283 kb on - strand at 4063.283 kb on - strand at 4063.351 kb on + strand at 4063.351 kb on + strand at 4063.359 kb on + strand at 4063.359 kb on + strand at 4063.360 kb on - strand at 4063.364 kb on - strand at 4063.387 kb on + strand at 4063.456 kb on + strand, within ECD_03843 at 4063.497 kb on - strand, within ECD_03843 at 4063.525 kb on + strand, within ECD_03843 at 4063.525 kb on + strand, within ECD_03843 at 4063.553 kb on + strand, within ECD_03843 at 4063.641 kb on + strand, within ECD_03843 at 4063.641 kb on + strand, within ECD_03843 at 4063.642 kb on - strand, within ECD_03843 at 4063.654 kb on - strand, within ECD_03843 at 4063.661 kb on + strand, within ECD_03843 at 4063.661 kb on + strand, within ECD_03843 at 4063.698 kb on + strand, within ECD_03843 at 4063.699 kb on - strand, within ECD_03843 at 4063.729 kb on + strand, within ECD_03843 at 4063.875 kb on - strand, within ECD_03843 at 4063.920 kb on + strand, within ECD_03843 at 4063.931 kb on + strand, within ECD_03843 at 4063.931 kb on + strand, within ECD_03843 at 4063.979 kb on + strand, within ECD_03843 at 4063.979 kb on + strand, within ECD_03843 at 4063.980 kb on - strand, within ECD_03843 at 4064.091 kb on + strand, within ECD_03843 at 4064.099 kb on + strand, within ECD_03843 at 4064.118 kb on + strand, within ECD_03843
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,061,049 + ECD_03841 0.77 -0.9 4,061,050 - ECD_03841 0.78 -0.8 4,061,084 + ECD_03841 0.79 -2.9 4,061,141 - ECD_03841 0.81 -2.7 4,061,150 + ECD_03841 0.81 -2.0 4,061,151 - ECD_03841 0.81 -0.3 4,061,211 - ECD_03841 0.84 -2.2 4,061,219 + ECD_03841 0.84 -3.6 4,061,318 + ECD_03841 0.88 -3.0 4,061,319 - ECD_03841 0.88 -1.2 4,061,528 + -4.0 4,061,528 + -0.8 4,061,529 - -1.5 4,061,529 - -1.5 4,061,606 + -1.4 4,061,606 + -0.8 4,061,607 - -2.9 4,061,607 - -0.7 4,061,607 - -1.6 4,061,607 - -1.9 4,061,616 - -3.5 4,061,618 + -2.3 4,061,618 + -0.9 4,061,619 - -1.6 4,061,619 - -0.5 4,061,634 - -3.4 4,061,645 + -1.1 4,061,645 + -2.1 4,061,668 - -1.7 4,061,668 - +0.5 4,061,678 - -0.3 4,061,678 - -0.4 4,061,686 - -0.8 4,061,712 - -0.3 4,061,742 - -0.3 4,061,799 + +0.7 4,061,804 - -0.3 4,061,823 - +0.0 4,061,839 - +0.3 4,061,842 + -0.3 4,061,849 - -0.9 4,061,849 - -0.4 4,061,853 + -0.6 4,061,877 + -0.2 4,061,877 + -0.1 4,061,881 + +0.3 4,061,881 + +1.1 4,061,881 + +1.2 4,061,904 + +0.6 4,061,932 + -0.5 4,061,933 - -0.5 4,061,999 - -0.9 4,062,021 + -2.0 4,062,050 + -1.0 4,062,050 + -2.5 4,062,051 - -1.9 4,062,051 - -1.1 4,062,140 + ECD_03842 0.12 -1.9 4,062,160 + ECD_03842 0.14 -1.1 4,062,160 + ECD_03842 0.14 -4.0 4,062,161 - ECD_03842 0.14 -1.8 4,062,161 - ECD_03842 0.14 -1.7 4,062,161 - ECD_03842 0.14 -4.1 4,062,161 - ECD_03842 0.14 -1.4 4,062,235 + ECD_03842 0.21 -1.6 4,062,236 - ECD_03842 0.21 -4.0 4,062,326 + ECD_03842 0.29 -3.0 4,062,327 - ECD_03842 0.29 -3.6 4,062,368 + ECD_03842 0.32 -3.9 4,062,368 + ECD_03842 0.32 -0.5 4,062,368 + ECD_03842 0.32 -2.1 4,062,369 - ECD_03842 0.32 -1.8 4,062,392 + ECD_03842 0.34 -3.0 4,062,393 - ECD_03842 0.34 -1.4 4,062,398 + ECD_03842 0.35 -2.6 4,062,398 + ECD_03842 0.35 -1.9 4,062,419 + ECD_03842 0.37 -4.9 4,062,420 - ECD_03842 0.37 -3.0 4,062,437 + ECD_03842 0.38 -2.3 4,062,438 - ECD_03842 0.38 -1.3 4,062,469 + ECD_03842 0.41 -2.1 4,062,503 + ECD_03842 0.44 -3.0 4,062,504 - ECD_03842 0.44 -3.0 4,062,504 - ECD_03842 0.44 -2.5 4,062,525 + ECD_03842 0.46 -1.8 4,062,525 + ECD_03842 0.46 -0.7 4,062,525 + ECD_03842 0.46 -0.6 4,062,526 - ECD_03842 0.46 -3.6 4,062,526 - ECD_03842 0.46 +0.7 4,062,540 - ECD_03842 0.47 -1.2 4,062,602 + ECD_03842 0.53 -1.6 4,062,602 + ECD_03842 0.53 -2.1 4,062,602 + ECD_03842 0.53 -1.4 4,062,603 - ECD_03842 0.53 -3.4 4,062,603 - ECD_03842 0.53 -3.7 4,062,603 - ECD_03842 0.53 -2.9 4,062,611 + ECD_03842 0.53 -2.4 4,062,611 + ECD_03842 0.53 -2.4 4,062,611 + ECD_03842 0.53 -0.9 4,062,611 + ECD_03842 0.53 -2.0 4,062,611 + ECD_03842 0.53 -3.7 4,062,612 - ECD_03842 0.53 -1.0 4,062,612 - ECD_03842 0.53 -0.9 4,062,612 - ECD_03842 0.53 -2.3 4,062,612 - ECD_03842 0.53 -1.1 4,062,612 - ECD_03842 0.53 -2.8 4,062,630 + ECD_03842 0.55 +0.0 4,062,691 + ECD_03842 0.60 -2.2 4,062,739 + ECD_03842 0.64 -2.3 4,062,740 - ECD_03842 0.64 -3.2 4,062,908 + ECD_03842 0.79 -2.6 4,062,908 + ECD_03842 0.79 -3.0 4,062,909 - ECD_03842 0.79 -1.1 4,062,909 - ECD_03842 0.79 -0.5 4,062,960 - ECD_03842 0.84 -2.0 4,063,045 - -3.9 4,063,087 - -2.3 4,063,225 + -0.1 4,063,259 - -2.0 4,063,259 - -1.4 4,063,282 + +0.5 4,063,282 + +0.4 4,063,282 + -0.0 4,063,282 + -1.1 4,063,282 + +0.2 4,063,282 + -0.9 4,063,282 + -0.4 4,063,282 + -0.3 4,063,283 - -3.0 4,063,283 - -1.3 4,063,283 - -3.6 4,063,283 - -1.8 4,063,283 - -5.0 4,063,351 + -1.6 4,063,351 + -0.7 4,063,359 + -1.2 4,063,359 + -1.7 4,063,360 - -1.0 4,063,364 - -2.4 4,063,387 + -1.5 4,063,456 + ECD_03843 0.15 -2.1 4,063,497 - ECD_03843 0.19 -2.9 4,063,525 + ECD_03843 0.22 -1.0 4,063,525 + ECD_03843 0.22 -1.4 4,063,553 + ECD_03843 0.25 -0.9 4,063,641 + ECD_03843 0.34 -2.8 4,063,641 + ECD_03843 0.34 -1.0 4,063,642 - ECD_03843 0.34 -3.0 4,063,654 - ECD_03843 0.35 -0.5 4,063,661 + ECD_03843 0.36 -1.6 4,063,661 + ECD_03843 0.36 -2.0 4,063,698 + ECD_03843 0.39 -2.1 4,063,699 - ECD_03843 0.40 -2.9 4,063,729 + ECD_03843 0.42 -0.8 4,063,875 - ECD_03843 0.57 -2.4 4,063,920 + ECD_03843 0.61 -0.5 4,063,931 + ECD_03843 0.63 -2.0 4,063,931 + ECD_03843 0.63 -1.9 4,063,979 + ECD_03843 0.67 -2.0 4,063,979 + ECD_03843 0.67 -1.1 4,063,980 - ECD_03843 0.67 -1.4 4,064,091 + ECD_03843 0.79 -2.7 4,064,099 + ECD_03843 0.79 -1.9 4,064,118 + ECD_03843 0.81 -3.0
Or see this region's nucleotide sequence