Strain Fitness in Escherichia coli BL21 around ECD_00473

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00472 and ECD_00473 overlap by 4 nucleotidesECD_00473 and ECD_00474 are separated by 117 nucleotidesECD_00474 and ECD_00475 are separated by 2 nucleotides ECD_00472: ECD_00472 - N5-carboxyaminoimidazole ribonucleotide synthase, at 520,614 to 521,681 _00472 ECD_00473: ECD_00473 - N5-carboxyaminoimidazole ribonucleotide mutase, at 521,678 to 522,187 _00473 ECD_00474: ECD_00474 - UDP-2,3-diacylglucosamine pyrophosphohydrolase, at 522,305 to 523,027 _00474 ECD_00475: ECD_00475 - peptidyl-prolyl cis-trans isomerase B (rotamase B), at 523,030 to 523,524 _00475 Position (kb) 521 522 523Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 520.743 kb on - strand, within ECD_00472at 520.807 kb on + strand, within ECD_00472at 520.821 kb on - strand, within ECD_00472at 520.851 kb on - strand, within ECD_00472at 520.949 kb on + strand, within ECD_00472at 521.120 kb on + strand, within ECD_00472at 521.121 kb on - strand, within ECD_00472at 521.213 kb on + strand, within ECD_00472at 521.214 kb on - strand, within ECD_00472at 521.214 kb on - strand, within ECD_00472at 521.232 kb on - strand, within ECD_00472at 521.232 kb on - strand, within ECD_00472at 521.385 kb on + strand, within ECD_00472at 521.385 kb on + strand, within ECD_00472at 521.454 kb on - strand, within ECD_00472at 521.640 kb on - strandat 521.865 kb on - strand, within ECD_00473at 521.874 kb on + strand, within ECD_00473at 521.875 kb on - strand, within ECD_00473at 521.990 kb on - strand, within ECD_00473at 522.041 kb on - strand, within ECD_00473

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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520,743 - ECD_00472 0.12 -0.2
520,807 + ECD_00472 0.18 -3.1
520,821 - ECD_00472 0.19 -0.8
520,851 - ECD_00472 0.22 -1.6
520,949 + ECD_00472 0.31 -3.4
521,120 + ECD_00472 0.47 -2.9
521,121 - ECD_00472 0.47 -3.8
521,213 + ECD_00472 0.56 -2.3
521,214 - ECD_00472 0.56 -2.1
521,214 - ECD_00472 0.56 -2.4
521,232 - ECD_00472 0.58 +0.5
521,232 - ECD_00472 0.58 -1.0
521,385 + ECD_00472 0.72 -3.3
521,385 + ECD_00472 0.72 -4.7
521,454 - ECD_00472 0.79 -3.2
521,640 - -2.0
521,865 - ECD_00473 0.37 -2.7
521,874 + ECD_00473 0.38 -4.3
521,875 - ECD_00473 0.39 -2.3
521,990 - ECD_00473 0.61 -2.4
522,041 - ECD_00473 0.71 -6.1

Or see this region's nucleotide sequence