Strain Fitness in Escherichia coli BL21 around ECD_00240

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00239 and ECD_00240 are separated by 11 nucleotidesECD_00240 and ECD_t00005 are separated by 114 nucleotidesECD_t00005 and ECD_00241 are separated by 126 nucleotidesECD_00241 and ECD_00242 overlap by 22 nucleotides ECD_00239: ECD_00239 - gamma-glutamate kinase, at 264,883 to 265,986 _00239 ECD_00240: ECD_00240 - gamma-glutamylphosphate reductase, at 265,998 to 267,251 _00240 ECD_t00005: ECD_t00005 - tRNA-Thr, at 267,366 to 267,441 _t00005 ECD_00241: ECD_00241 - putative transcriptional regulator, at 267,568 to 267,978 _00241 ECD_00242: ECD_00242 - moco insertion factor for PaoABC aldehyde oxidoreductase, at 267,957 to 268,913 _00242 Position (kb) 265 266 267 268Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 265.163 kb on - strand, within ECD_00239at 265.204 kb on - strand, within ECD_00239at 265.266 kb on + strand, within ECD_00239at 265.314 kb on + strand, within ECD_00239at 265.314 kb on + strand, within ECD_00239at 265.315 kb on - strand, within ECD_00239at 265.406 kb on - strand, within ECD_00239at 265.446 kb on + strand, within ECD_00239at 265.446 kb on + strand, within ECD_00239at 265.446 kb on + strand, within ECD_00239at 265.721 kb on + strand, within ECD_00239at 265.782 kb on + strand, within ECD_00239at 265.783 kb on - strand, within ECD_00239at 265.783 kb on - strand, within ECD_00239at 265.870 kb on + strand, within ECD_00239at 265.928 kb on + strandat 266.353 kb on - strand, within ECD_00240at 266.353 kb on - strand, within ECD_00240at 266.353 kb on - strand, within ECD_00240at 266.570 kb on + strand, within ECD_00240at 266.574 kb on + strand, within ECD_00240at 266.574 kb on + strand, within ECD_00240at 266.574 kb on + strand, within ECD_00240at 266.574 kb on + strand, within ECD_00240at 266.662 kb on + strand, within ECD_00240at 266.668 kb on + strand, within ECD_00240at 266.679 kb on + strand, within ECD_00240at 266.679 kb on + strand, within ECD_00240at 266.679 kb on + strand, within ECD_00240at 266.713 kb on + strand, within ECD_00240at 266.713 kb on + strand, within ECD_00240at 266.756 kb on + strand, within ECD_00240at 266.756 kb on + strand, within ECD_00240at 266.756 kb on + strand, within ECD_00240at 266.756 kb on + strand, within ECD_00240at 266.756 kb on + strand, within ECD_00240at 266.757 kb on - strand, within ECD_00240at 266.760 kb on - strand, within ECD_00240at 266.816 kb on - strand, within ECD_00240at 266.848 kb on + strand, within ECD_00240at 267.090 kb on + strand, within ECD_00240at 267.113 kb on + strand, within ECD_00240at 267.210 kb on + strandat 267.210 kb on + strandat 267.210 kb on + strandat 267.211 kb on - strandat 267.211 kb on - strandat 267.234 kb on + strandat 267.250 kb on - strandat 267.250 kb on - strandat 267.253 kb on + strandat 267.253 kb on + strandat 267.373 kb on + strandat 267.373 kb on + strandat 267.444 kb on + strandat 267.453 kb on + strandat 267.469 kb on - strandat 267.510 kb on + strandat 267.510 kb on + strandat 267.510 kb on + strandat 267.511 kb on - strandat 267.511 kb on - strandat 267.651 kb on - strand, within ECD_00241at 267.657 kb on - strand, within ECD_00241at 267.697 kb on + strand, within ECD_00241at 267.718 kb on - strand, within ECD_00241at 267.720 kb on - strand, within ECD_00241at 267.720 kb on - strand, within ECD_00241at 267.720 kb on - strand, within ECD_00241at 267.805 kb on - strand, within ECD_00241at 267.805 kb on - strand, within ECD_00241at 267.903 kb on + strand, within ECD_00241at 267.904 kb on - strand, within ECD_00241at 267.910 kb on - strand, within ECD_00241at 267.910 kb on - strand, within ECD_00241at 267.910 kb on - strand, within ECD_00241at 268.003 kb on - strandat 268.003 kb on - strandat 268.003 kb on - strandat 268.003 kb on - strandat 268.040 kb on + strandat 268.174 kb on + strand, within ECD_00242

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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265,163 - ECD_00239 0.25 -4.6
265,204 - ECD_00239 0.29 -2.1
265,266 + ECD_00239 0.35 -3.6
265,314 + ECD_00239 0.39 -3.2
265,314 + ECD_00239 0.39 -4.6
265,315 - ECD_00239 0.39 -1.4
265,406 - ECD_00239 0.47 -3.7
265,446 + ECD_00239 0.51 -2.2
265,446 + ECD_00239 0.51 -2.8
265,446 + ECD_00239 0.51 -2.2
265,721 + ECD_00239 0.76 -0.0
265,782 + ECD_00239 0.81 -1.5
265,783 - ECD_00239 0.82 -2.3
265,783 - ECD_00239 0.82 -2.3
265,870 + ECD_00239 0.89 -3.1
265,928 + -0.8
266,353 - ECD_00240 0.28 -4.0
266,353 - ECD_00240 0.28 -2.7
266,353 - ECD_00240 0.28 -2.6
266,570 + ECD_00240 0.46 -2.7
266,574 + ECD_00240 0.46 -1.2
266,574 + ECD_00240 0.46 -3.8
266,574 + ECD_00240 0.46 -4.3
266,574 + ECD_00240 0.46 -3.7
266,662 + ECD_00240 0.53 -1.7
266,668 + ECD_00240 0.53 -2.7
266,679 + ECD_00240 0.54 -3.8
266,679 + ECD_00240 0.54 -3.3
266,679 + ECD_00240 0.54 -4.5
266,713 + ECD_00240 0.57 -2.8
266,713 + ECD_00240 0.57 -3.8
266,756 + ECD_00240 0.60 -4.6
266,756 + ECD_00240 0.60 -3.2
266,756 + ECD_00240 0.60 -2.3
266,756 + ECD_00240 0.60 -5.1
266,756 + ECD_00240 0.60 -4.1
266,757 - ECD_00240 0.61 -3.8
266,760 - ECD_00240 0.61 -2.7
266,816 - ECD_00240 0.65 -3.0
266,848 + ECD_00240 0.68 -2.1
267,090 + ECD_00240 0.87 -2.9
267,113 + ECD_00240 0.89 -5.0
267,210 + -3.2
267,210 + -5.1
267,210 + -3.9
267,211 - -4.9
267,211 - -3.4
267,234 + +1.0
267,250 - +0.5
267,250 - -1.1
267,253 + +0.1
267,253 + +1.1
267,373 + +0.7
267,373 + +0.0
267,444 + -0.3
267,453 + +0.3
267,469 - +0.0
267,510 + -1.2
267,510 + -0.1
267,510 + -0.5
267,511 - +1.3
267,511 - +0.8
267,651 - ECD_00241 0.20 -0.1
267,657 - ECD_00241 0.22 -0.1
267,697 + ECD_00241 0.31 -0.9
267,718 - ECD_00241 0.36 +0.6
267,720 - ECD_00241 0.37 +0.5
267,720 - ECD_00241 0.37 +0.8
267,720 - ECD_00241 0.37 +0.8
267,805 - ECD_00241 0.58 +1.2
267,805 - ECD_00241 0.58 +0.6
267,903 + ECD_00241 0.82 -0.5
267,904 - ECD_00241 0.82 -0.2
267,910 - ECD_00241 0.83 +0.2
267,910 - ECD_00241 0.83 +1.2
267,910 - ECD_00241 0.83 +1.4
268,003 - -0.3
268,003 - +0.2
268,003 - +0.9
268,003 - +0.4
268,040 + -1.6
268,174 + ECD_00242 0.23 +0.9

Or see this region's nucleotide sequence