Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00036 and ECD_00037 are separated by 17 nucleotides ECD_00037 and ECD_00038 are separated by 261 nucleotides ECD_00038 and ECD_00039 are separated by 208 nucleotides
ECD_00036: ECD_00036 - carbamoyl phosphate synthetase small subunit, glutamine amidotransferase, at 33,723 to 34,871
_00036
ECD_00037: ECD_00037 - carbamoyl-phosphate synthase large subunit, at 34,889 to 38,110
_00037
ECD_00038: ECD_00038 - cai operon transcriptional activator, at 38,372 to 38,767
_00038
ECD_00039: ECD_00039 - stimulator of CaiD and CaiB enzyme activities, at 38,976 to 39,566
_00039
Position (kb)
34
35
36
37
38
39 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 33.891 kb on + strand, within ECD_00036 at 33.891 kb on + strand, within ECD_00036 at 33.892 kb on - strand, within ECD_00036 at 33.946 kb on + strand, within ECD_00036 at 34.004 kb on + strand, within ECD_00036 at 34.038 kb on - strand, within ECD_00036 at 34.224 kb on + strand, within ECD_00036 at 34.226 kb on + strand, within ECD_00036 at 34.685 kb on - strand, within ECD_00036 at 34.710 kb on - strand, within ECD_00036 at 34.710 kb on - strand, within ECD_00036 at 34.857 kb on - strand at 34.869 kb on + strand at 34.879 kb on + strand at 34.900 kb on + strand at 34.901 kb on - strand at 34.906 kb on + strand at 34.909 kb on - strand at 34.915 kb on + strand at 34.970 kb on + strand at 34.990 kb on + strand at 34.990 kb on + strand at 34.990 kb on + strand at 34.990 kb on + strand at 34.990 kb on + strand at 34.991 kb on - strand at 35.081 kb on + strand at 35.082 kb on - strand at 35.082 kb on - strand at 35.106 kb on + strand at 35.107 kb on - strand at 35.230 kb on + strand, within ECD_00037 at 35.404 kb on + strand, within ECD_00037 at 35.436 kb on - strand, within ECD_00037 at 35.669 kb on + strand, within ECD_00037 at 35.948 kb on + strand, within ECD_00037 at 35.949 kb on - strand, within ECD_00037 at 35.949 kb on - strand, within ECD_00037 at 35.949 kb on - strand, within ECD_00037 at 36.193 kb on + strand, within ECD_00037 at 36.194 kb on - strand, within ECD_00037 at 36.200 kb on + strand, within ECD_00037 at 36.200 kb on + strand, within ECD_00037 at 36.200 kb on + strand, within ECD_00037 at 36.446 kb on + strand, within ECD_00037 at 36.447 kb on - strand, within ECD_00037 at 36.447 kb on - strand, within ECD_00037 at 36.465 kb on - strand, within ECD_00037 at 36.466 kb on + strand, within ECD_00037 at 36.467 kb on - strand, within ECD_00037 at 36.512 kb on + strand, within ECD_00037 at 36.512 kb on + strand, within ECD_00037 at 36.513 kb on - strand, within ECD_00037 at 36.513 kb on - strand, within ECD_00037 at 36.513 kb on - strand, within ECD_00037 at 36.519 kb on - strand, within ECD_00037 at 36.519 kb on - strand, within ECD_00037 at 36.519 kb on - strand, within ECD_00037 at 36.527 kb on + strand, within ECD_00037 at 36.679 kb on + strand, within ECD_00037 at 36.716 kb on + strand, within ECD_00037 at 36.716 kb on + strand, within ECD_00037 at 36.812 kb on + strand, within ECD_00037 at 37.029 kb on + strand, within ECD_00037 at 37.097 kb on + strand, within ECD_00037 at 37.167 kb on + strand, within ECD_00037 at 37.290 kb on + strand, within ECD_00037 at 37.290 kb on + strand, within ECD_00037 at 37.291 kb on - strand, within ECD_00037 at 37.291 kb on - strand, within ECD_00037 at 37.432 kb on + strand, within ECD_00037 at 37.433 kb on - strand, within ECD_00037 at 37.525 kb on - strand, within ECD_00037 at 37.547 kb on + strand, within ECD_00037 at 37.582 kb on + strand, within ECD_00037 at 37.903 kb on + strand at 37.903 kb on + strand at 37.919 kb on - strand at 37.919 kb on - strand at 37.922 kb on + strand at 37.922 kb on + strand at 37.923 kb on - strand at 37.923 kb on - strand at 37.923 kb on - strand at 37.923 kb on - strand at 37.923 kb on - strand at 37.994 kb on + strand at 37.995 kb on - strand at 37.996 kb on + strand at 37.996 kb on + strand at 37.996 kb on + strand at 37.996 kb on + strand at 37.996 kb on + strand at 37.997 kb on - strand at 37.997 kb on - strand at 38.109 kb on - strand at 38.237 kb on + strand at 38.237 kb on + strand at 38.237 kb on + strand at 38.278 kb on + strand at 38.279 kb on - strand at 38.338 kb on - strand at 38.349 kb on + strand at 38.371 kb on + strand at 38.500 kb on + strand, within ECD_00038 at 38.510 kb on + strand, within ECD_00038 at 38.510 kb on + strand, within ECD_00038 at 38.511 kb on - strand, within ECD_00038 at 38.511 kb on - strand, within ECD_00038 at 38.512 kb on + strand, within ECD_00038 at 38.548 kb on + strand, within ECD_00038 at 38.560 kb on + strand, within ECD_00038 at 38.561 kb on - strand, within ECD_00038 at 38.647 kb on + strand, within ECD_00038 at 38.648 kb on - strand, within ECD_00038 at 38.755 kb on + strand at 38.755 kb on + strand at 38.756 kb on - strand at 38.756 kb on - strand at 38.922 kb on + strand at 38.958 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 33,891 + ECD_00036 0.15 -2.9 33,891 + ECD_00036 0.15 -3.4 33,892 - ECD_00036 0.15 +0.2 33,946 + ECD_00036 0.19 -0.2 34,004 + ECD_00036 0.24 -2.2 34,038 - ECD_00036 0.27 -4.2 34,224 + ECD_00036 0.44 -4.1 34,226 + ECD_00036 0.44 -1.4 34,685 - ECD_00036 0.84 -1.4 34,710 - ECD_00036 0.86 -2.9 34,710 - ECD_00036 0.86 -2.1 34,857 - -0.5 34,869 + +0.8 34,879 + -0.0 34,900 + -1.1 34,901 - -0.7 34,906 + -1.2 34,909 - -1.9 34,915 + -1.3 34,970 + -0.5 34,990 + -2.2 34,990 + -2.7 34,990 + -1.5 34,990 + -1.7 34,990 + -1.4 34,991 - -1.2 35,081 + -0.8 35,082 - -1.2 35,082 - -1.4 35,106 + -1.1 35,107 - -3.6 35,230 + ECD_00037 0.11 -2.1 35,404 + ECD_00037 0.16 +0.5 35,436 - ECD_00037 0.17 -2.2 35,669 + ECD_00037 0.24 -2.0 35,948 + ECD_00037 0.33 -4.7 35,949 - ECD_00037 0.33 -3.5 35,949 - ECD_00037 0.33 -0.4 35,949 - ECD_00037 0.33 -2.7 36,193 + ECD_00037 0.40 -2.6 36,194 - ECD_00037 0.41 -3.2 36,200 + ECD_00037 0.41 -2.3 36,200 + ECD_00037 0.41 -2.3 36,200 + ECD_00037 0.41 -4.7 36,446 + ECD_00037 0.48 -2.6 36,447 - ECD_00037 0.48 -3.7 36,447 - ECD_00037 0.48 -0.1 36,465 - ECD_00037 0.49 -1.9 36,466 + ECD_00037 0.49 -0.7 36,467 - ECD_00037 0.49 -3.3 36,512 + ECD_00037 0.50 -1.2 36,512 + ECD_00037 0.50 -1.7 36,513 - ECD_00037 0.50 -1.0 36,513 - ECD_00037 0.50 -0.9 36,513 - ECD_00037 0.50 -1.7 36,519 - ECD_00037 0.51 -1.1 36,519 - ECD_00037 0.51 -2.1 36,519 - ECD_00037 0.51 -0.0 36,527 + ECD_00037 0.51 -1.2 36,679 + ECD_00037 0.56 -1.2 36,716 + ECD_00037 0.57 +0.1 36,716 + ECD_00037 0.57 -0.5 36,812 + ECD_00037 0.60 -2.4 37,029 + ECD_00037 0.66 -2.3 37,097 + ECD_00037 0.69 -3.4 37,167 + ECD_00037 0.71 -2.6 37,290 + ECD_00037 0.75 -2.3 37,290 + ECD_00037 0.75 -2.9 37,291 - ECD_00037 0.75 -1.1 37,291 - ECD_00037 0.75 -1.9 37,432 + ECD_00037 0.79 -0.4 37,433 - ECD_00037 0.79 -2.6 37,525 - ECD_00037 0.82 -3.0 37,547 + ECD_00037 0.82 -1.6 37,582 + ECD_00037 0.84 -2.4 37,903 + +0.9 37,903 + -2.0 37,919 - -2.2 37,919 - -3.0 37,922 + -1.3 37,922 + -2.2 37,923 - -3.2 37,923 - -1.4 37,923 - -2.4 37,923 - -0.3 37,923 - -1.0 37,994 + -1.0 37,995 - -1.9 37,996 + -1.9 37,996 + -1.0 37,996 + +0.2 37,996 + -3.3 37,996 + -0.5 37,997 - -2.8 37,997 - -0.2 38,109 - +0.7 38,237 + +0.6 38,237 + +0.3 38,237 + -0.2 38,278 + +0.7 38,279 - -0.5 38,338 - +0.4 38,349 + -0.5 38,371 + +0.7 38,500 + ECD_00038 0.32 -0.2 38,510 + ECD_00038 0.35 -0.1 38,510 + ECD_00038 0.35 +0.2 38,511 - ECD_00038 0.35 +0.6 38,511 - ECD_00038 0.35 +1.2 38,512 + ECD_00038 0.35 +0.6 38,548 + ECD_00038 0.44 -0.0 38,560 + ECD_00038 0.47 -0.2 38,561 - ECD_00038 0.48 +1.3 38,647 + ECD_00038 0.69 +0.8 38,648 - ECD_00038 0.70 +0.4 38,755 + -0.8 38,755 + +0.0 38,756 - +2.4 38,756 - +0.8 38,922 + -0.4 38,958 - +0.2
Or see this region's nucleotide sequence