Strain Fitness in Escherichia coli BL21 around ECD_00037

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00036 and ECD_00037 are separated by 17 nucleotidesECD_00037 and ECD_00038 are separated by 261 nucleotidesECD_00038 and ECD_00039 are separated by 208 nucleotides ECD_00036: ECD_00036 - carbamoyl phosphate synthetase small subunit, glutamine amidotransferase, at 33,723 to 34,871 _00036 ECD_00037: ECD_00037 - carbamoyl-phosphate synthase large subunit, at 34,889 to 38,110 _00037 ECD_00038: ECD_00038 - cai operon transcriptional activator, at 38,372 to 38,767 _00038 ECD_00039: ECD_00039 - stimulator of CaiD and CaiB enzyme activities, at 38,976 to 39,566 _00039 Position (kb) 34 35 36 37 38 39Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 33.891 kb on + strand, within ECD_00036at 33.891 kb on + strand, within ECD_00036at 33.892 kb on - strand, within ECD_00036at 33.946 kb on + strand, within ECD_00036at 34.004 kb on + strand, within ECD_00036at 34.038 kb on - strand, within ECD_00036at 34.224 kb on + strand, within ECD_00036at 34.226 kb on + strand, within ECD_00036at 34.685 kb on - strand, within ECD_00036at 34.710 kb on - strand, within ECD_00036at 34.710 kb on - strand, within ECD_00036at 34.857 kb on - strandat 34.869 kb on + strandat 34.879 kb on + strandat 34.900 kb on + strandat 34.901 kb on - strandat 34.906 kb on + strandat 34.909 kb on - strandat 34.915 kb on + strandat 34.970 kb on + strandat 34.990 kb on + strandat 34.990 kb on + strandat 34.990 kb on + strandat 34.990 kb on + strandat 34.990 kb on + strandat 34.991 kb on - strandat 35.081 kb on + strandat 35.082 kb on - strandat 35.082 kb on - strandat 35.106 kb on + strandat 35.107 kb on - strandat 35.230 kb on + strand, within ECD_00037at 35.404 kb on + strand, within ECD_00037at 35.436 kb on - strand, within ECD_00037at 35.669 kb on + strand, within ECD_00037at 35.948 kb on + strand, within ECD_00037at 35.949 kb on - strand, within ECD_00037at 35.949 kb on - strand, within ECD_00037at 35.949 kb on - strand, within ECD_00037at 36.193 kb on + strand, within ECD_00037at 36.194 kb on - strand, within ECD_00037at 36.200 kb on + strand, within ECD_00037at 36.200 kb on + strand, within ECD_00037at 36.200 kb on + strand, within ECD_00037at 36.446 kb on + strand, within ECD_00037at 36.447 kb on - strand, within ECD_00037at 36.447 kb on - strand, within ECD_00037at 36.465 kb on - strand, within ECD_00037at 36.466 kb on + strand, within ECD_00037at 36.467 kb on - strand, within ECD_00037at 36.512 kb on + strand, within ECD_00037at 36.512 kb on + strand, within ECD_00037at 36.513 kb on - strand, within ECD_00037at 36.513 kb on - strand, within ECD_00037at 36.513 kb on - strand, within ECD_00037at 36.519 kb on - strand, within ECD_00037at 36.519 kb on - strand, within ECD_00037at 36.519 kb on - strand, within ECD_00037at 36.527 kb on + strand, within ECD_00037at 36.679 kb on + strand, within ECD_00037at 36.716 kb on + strand, within ECD_00037at 36.716 kb on + strand, within ECD_00037at 36.812 kb on + strand, within ECD_00037at 37.029 kb on + strand, within ECD_00037at 37.097 kb on + strand, within ECD_00037at 37.167 kb on + strand, within ECD_00037at 37.290 kb on + strand, within ECD_00037at 37.290 kb on + strand, within ECD_00037at 37.291 kb on - strand, within ECD_00037at 37.291 kb on - strand, within ECD_00037at 37.432 kb on + strand, within ECD_00037at 37.433 kb on - strand, within ECD_00037at 37.525 kb on - strand, within ECD_00037at 37.547 kb on + strand, within ECD_00037at 37.582 kb on + strand, within ECD_00037at 37.903 kb on + strandat 37.903 kb on + strandat 37.919 kb on - strandat 37.919 kb on - strandat 37.922 kb on + strandat 37.922 kb on + strandat 37.923 kb on - strandat 37.923 kb on - strandat 37.923 kb on - strandat 37.923 kb on - strandat 37.923 kb on - strandat 37.994 kb on + strandat 37.995 kb on - strandat 37.996 kb on + strandat 37.996 kb on + strandat 37.996 kb on + strandat 37.996 kb on + strandat 37.996 kb on + strandat 37.997 kb on - strandat 37.997 kb on - strandat 38.109 kb on - strandat 38.237 kb on + strandat 38.237 kb on + strandat 38.237 kb on + strandat 38.278 kb on + strandat 38.279 kb on - strandat 38.338 kb on - strandat 38.349 kb on + strandat 38.371 kb on + strandat 38.500 kb on + strand, within ECD_00038at 38.510 kb on + strand, within ECD_00038at 38.510 kb on + strand, within ECD_00038at 38.511 kb on - strand, within ECD_00038at 38.511 kb on - strand, within ECD_00038at 38.512 kb on + strand, within ECD_00038at 38.548 kb on + strand, within ECD_00038at 38.560 kb on + strand, within ECD_00038at 38.561 kb on - strand, within ECD_00038at 38.647 kb on + strand, within ECD_00038at 38.648 kb on - strand, within ECD_00038at 38.755 kb on + strandat 38.755 kb on + strandat 38.756 kb on - strandat 38.756 kb on - strandat 38.922 kb on + strandat 38.958 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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33,891 + ECD_00036 0.15 -2.9
33,891 + ECD_00036 0.15 -3.4
33,892 - ECD_00036 0.15 +0.2
33,946 + ECD_00036 0.19 -0.2
34,004 + ECD_00036 0.24 -2.2
34,038 - ECD_00036 0.27 -4.2
34,224 + ECD_00036 0.44 -4.1
34,226 + ECD_00036 0.44 -1.4
34,685 - ECD_00036 0.84 -1.4
34,710 - ECD_00036 0.86 -2.9
34,710 - ECD_00036 0.86 -2.1
34,857 - -0.5
34,869 + +0.8
34,879 + -0.0
34,900 + -1.1
34,901 - -0.7
34,906 + -1.2
34,909 - -1.9
34,915 + -1.3
34,970 + -0.5
34,990 + -2.2
34,990 + -2.7
34,990 + -1.5
34,990 + -1.7
34,990 + -1.4
34,991 - -1.2
35,081 + -0.8
35,082 - -1.2
35,082 - -1.4
35,106 + -1.1
35,107 - -3.6
35,230 + ECD_00037 0.11 -2.1
35,404 + ECD_00037 0.16 +0.5
35,436 - ECD_00037 0.17 -2.2
35,669 + ECD_00037 0.24 -2.0
35,948 + ECD_00037 0.33 -4.7
35,949 - ECD_00037 0.33 -3.5
35,949 - ECD_00037 0.33 -0.4
35,949 - ECD_00037 0.33 -2.7
36,193 + ECD_00037 0.40 -2.6
36,194 - ECD_00037 0.41 -3.2
36,200 + ECD_00037 0.41 -2.3
36,200 + ECD_00037 0.41 -2.3
36,200 + ECD_00037 0.41 -4.7
36,446 + ECD_00037 0.48 -2.6
36,447 - ECD_00037 0.48 -3.7
36,447 - ECD_00037 0.48 -0.1
36,465 - ECD_00037 0.49 -1.9
36,466 + ECD_00037 0.49 -0.7
36,467 - ECD_00037 0.49 -3.3
36,512 + ECD_00037 0.50 -1.2
36,512 + ECD_00037 0.50 -1.7
36,513 - ECD_00037 0.50 -1.0
36,513 - ECD_00037 0.50 -0.9
36,513 - ECD_00037 0.50 -1.7
36,519 - ECD_00037 0.51 -1.1
36,519 - ECD_00037 0.51 -2.1
36,519 - ECD_00037 0.51 -0.0
36,527 + ECD_00037 0.51 -1.2
36,679 + ECD_00037 0.56 -1.2
36,716 + ECD_00037 0.57 +0.1
36,716 + ECD_00037 0.57 -0.5
36,812 + ECD_00037 0.60 -2.4
37,029 + ECD_00037 0.66 -2.3
37,097 + ECD_00037 0.69 -3.4
37,167 + ECD_00037 0.71 -2.6
37,290 + ECD_00037 0.75 -2.3
37,290 + ECD_00037 0.75 -2.9
37,291 - ECD_00037 0.75 -1.1
37,291 - ECD_00037 0.75 -1.9
37,432 + ECD_00037 0.79 -0.4
37,433 - ECD_00037 0.79 -2.6
37,525 - ECD_00037 0.82 -3.0
37,547 + ECD_00037 0.82 -1.6
37,582 + ECD_00037 0.84 -2.4
37,903 + +0.9
37,903 + -2.0
37,919 - -2.2
37,919 - -3.0
37,922 + -1.3
37,922 + -2.2
37,923 - -3.2
37,923 - -1.4
37,923 - -2.4
37,923 - -0.3
37,923 - -1.0
37,994 + -1.0
37,995 - -1.9
37,996 + -1.9
37,996 + -1.0
37,996 + +0.2
37,996 + -3.3
37,996 + -0.5
37,997 - -2.8
37,997 - -0.2
38,109 - +0.7
38,237 + +0.6
38,237 + +0.3
38,237 + -0.2
38,278 + +0.7
38,279 - -0.5
38,338 - +0.4
38,349 + -0.5
38,371 + +0.7
38,500 + ECD_00038 0.32 -0.2
38,510 + ECD_00038 0.35 -0.1
38,510 + ECD_00038 0.35 +0.2
38,511 - ECD_00038 0.35 +0.6
38,511 - ECD_00038 0.35 +1.2
38,512 + ECD_00038 0.35 +0.6
38,548 + ECD_00038 0.44 -0.0
38,560 + ECD_00038 0.47 -0.2
38,561 - ECD_00038 0.48 +1.3
38,647 + ECD_00038 0.69 +0.8
38,648 - ECD_00038 0.70 +0.4
38,755 + -0.8
38,755 + +0.0
38,756 - +2.4
38,756 - +0.8
38,922 + -0.4
38,958 - +0.2

Or see this region's nucleotide sequence