Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02836 and ECD_02837 overlap by 1 nucleotides ECD_02837 and ECD_02838 overlap by 1 nucleotides
ECD_02836: ECD_02836 - putative type II secretion protein GspF, at 2,967,565 to 2,968,788
_02836
ECD_02837: ECD_02837 - putative type II secretion protein GspE, at 2,968,788 to 2,970,281
_02837
ECD_02838: ECD_02838 - putative type II secretion protein GspD, at 2,970,281 to 2,972,341
_02838
Position (kb)
2968
2969
2970
2971 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2967.879 kb on - strand, within ECD_02836 at 2967.952 kb on + strand, within ECD_02836 at 2967.953 kb on - strand, within ECD_02836 at 2968.259 kb on - strand, within ECD_02836 at 2968.259 kb on - strand, within ECD_02836 at 2968.484 kb on - strand, within ECD_02836 at 2968.553 kb on - strand, within ECD_02836 at 2968.553 kb on - strand, within ECD_02836 at 2968.553 kb on - strand, within ECD_02836 at 2968.686 kb on + strand at 2968.687 kb on - strand at 2968.756 kb on - strand at 2968.756 kb on - strand at 2968.891 kb on + strand at 2968.892 kb on - strand at 2968.892 kb on - strand at 2968.977 kb on - strand, within ECD_02837 at 2969.000 kb on + strand, within ECD_02837 at 2969.001 kb on - strand, within ECD_02837 at 2969.001 kb on - strand, within ECD_02837 at 2969.223 kb on - strand, within ECD_02837 at 2969.313 kb on + strand, within ECD_02837 at 2969.313 kb on + strand, within ECD_02837 at 2969.313 kb on + strand, within ECD_02837 at 2969.313 kb on + strand, within ECD_02837 at 2969.314 kb on - strand, within ECD_02837 at 2969.314 kb on - strand, within ECD_02837 at 2969.411 kb on - strand, within ECD_02837 at 2969.817 kb on + strand, within ECD_02837 at 2969.817 kb on + strand, within ECD_02837 at 2969.817 kb on + strand, within ECD_02837 at 2969.817 kb on + strand, within ECD_02837 at 2969.818 kb on - strand, within ECD_02837 at 2969.818 kb on - strand, within ECD_02837 at 2969.818 kb on - strand, within ECD_02837 at 2969.818 kb on - strand, within ECD_02837 at 2969.818 kb on - strand, within ECD_02837 at 2970.251 kb on + strand at 2970.270 kb on + strand at 2970.271 kb on - strand at 2970.381 kb on - strand at 2970.420 kb on + strand at 2970.420 kb on + strand at 2970.421 kb on - strand at 2970.421 kb on - strand at 2970.421 kb on - strand at 2970.421 kb on - strand at 2970.421 kb on - strand at 2970.424 kb on + strand at 2970.427 kb on - strand at 2970.734 kb on + strand, within ECD_02838 at 2970.835 kb on + strand, within ECD_02838 at 2970.926 kb on - strand, within ECD_02838 at 2971.055 kb on + strand, within ECD_02838 at 2971.055 kb on + strand, within ECD_02838 at 2971.063 kb on + strand, within ECD_02838 at 2971.211 kb on - strand, within ECD_02838
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 2,967,879 - ECD_02836 0.26 +0.6 2,967,952 + ECD_02836 0.32 +0.4 2,967,953 - ECD_02836 0.32 +0.3 2,968,259 - ECD_02836 0.57 -0.2 2,968,259 - ECD_02836 0.57 -0.4 2,968,484 - ECD_02836 0.75 +0.9 2,968,553 - ECD_02836 0.81 -0.9 2,968,553 - ECD_02836 0.81 -0.2 2,968,553 - ECD_02836 0.81 +0.8 2,968,686 + +0.4 2,968,687 - -1.2 2,968,756 - +0.3 2,968,756 - +0.7 2,968,891 + +0.4 2,968,892 - -2.2 2,968,892 - +0.2 2,968,977 - ECD_02837 0.13 +0.5 2,969,000 + ECD_02837 0.14 -0.6 2,969,001 - ECD_02837 0.14 +0.7 2,969,001 - ECD_02837 0.14 -0.3 2,969,223 - ECD_02837 0.29 +0.2 2,969,313 + ECD_02837 0.35 +0.2 2,969,313 + ECD_02837 0.35 +0.4 2,969,313 + ECD_02837 0.35 -0.0 2,969,313 + ECD_02837 0.35 -0.1 2,969,314 - ECD_02837 0.35 +0.5 2,969,314 - ECD_02837 0.35 +0.9 2,969,411 - ECD_02837 0.42 +1.2 2,969,817 + ECD_02837 0.69 +1.0 2,969,817 + ECD_02837 0.69 +0.6 2,969,817 + ECD_02837 0.69 +0.1 2,969,817 + ECD_02837 0.69 +2.0 2,969,818 - ECD_02837 0.69 +0.5 2,969,818 - ECD_02837 0.69 +0.2 2,969,818 - ECD_02837 0.69 +0.4 2,969,818 - ECD_02837 0.69 -0.1 2,969,818 - ECD_02837 0.69 +0.6 2,970,251 + +0.3 2,970,270 + +0.3 2,970,271 - -0.1 2,970,381 - +1.0 2,970,420 + +1.1 2,970,420 + -0.1 2,970,421 - -0.2 2,970,421 - +0.3 2,970,421 - +0.2 2,970,421 - -1.1 2,970,421 - +0.4 2,970,424 + +1.5 2,970,427 - -0.6 2,970,734 + ECD_02838 0.22 +0.0 2,970,835 + ECD_02838 0.27 -0.1 2,970,926 - ECD_02838 0.31 +0.9 2,971,055 + ECD_02838 0.38 +0.5 2,971,055 + ECD_02838 0.38 -0.3 2,971,063 + ECD_02838 0.38 -0.2 2,971,211 - ECD_02838 0.45 +0.1
Or see this region's nucleotide sequence