Strain Fitness in Escherichia coli BL21 around ECD_02837

Experiment: L-Rhamnose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02836 and ECD_02837 overlap by 1 nucleotidesECD_02837 and ECD_02838 overlap by 1 nucleotides ECD_02836: ECD_02836 - putative type II secretion protein GspF, at 2,967,565 to 2,968,788 _02836 ECD_02837: ECD_02837 - putative type II secretion protein GspE, at 2,968,788 to 2,970,281 _02837 ECD_02838: ECD_02838 - putative type II secretion protein GspD, at 2,970,281 to 2,972,341 _02838 Position (kb) 2968 2969 2970 2971Strain fitness (log2 ratio) -2 -1 0 1 2at 2967.879 kb on - strand, within ECD_02836at 2967.952 kb on + strand, within ECD_02836at 2967.953 kb on - strand, within ECD_02836at 2968.259 kb on - strand, within ECD_02836at 2968.259 kb on - strand, within ECD_02836at 2968.484 kb on - strand, within ECD_02836at 2968.553 kb on - strand, within ECD_02836at 2968.553 kb on - strand, within ECD_02836at 2968.553 kb on - strand, within ECD_02836at 2968.686 kb on + strandat 2968.687 kb on - strandat 2968.756 kb on - strandat 2968.756 kb on - strandat 2968.891 kb on + strandat 2968.892 kb on - strandat 2968.892 kb on - strandat 2968.977 kb on - strand, within ECD_02837at 2969.000 kb on + strand, within ECD_02837at 2969.001 kb on - strand, within ECD_02837at 2969.001 kb on - strand, within ECD_02837at 2969.223 kb on - strand, within ECD_02837at 2969.313 kb on + strand, within ECD_02837at 2969.313 kb on + strand, within ECD_02837at 2969.313 kb on + strand, within ECD_02837at 2969.313 kb on + strand, within ECD_02837at 2969.314 kb on - strand, within ECD_02837at 2969.314 kb on - strand, within ECD_02837at 2969.411 kb on - strand, within ECD_02837at 2969.817 kb on + strand, within ECD_02837at 2969.817 kb on + strand, within ECD_02837at 2969.817 kb on + strand, within ECD_02837at 2969.817 kb on + strand, within ECD_02837at 2969.818 kb on - strand, within ECD_02837at 2969.818 kb on - strand, within ECD_02837at 2969.818 kb on - strand, within ECD_02837at 2969.818 kb on - strand, within ECD_02837at 2969.818 kb on - strand, within ECD_02837at 2970.251 kb on + strandat 2970.270 kb on + strandat 2970.271 kb on - strandat 2970.381 kb on - strandat 2970.420 kb on + strandat 2970.420 kb on + strandat 2970.421 kb on - strandat 2970.421 kb on - strandat 2970.421 kb on - strandat 2970.421 kb on - strandat 2970.421 kb on - strandat 2970.424 kb on + strandat 2970.427 kb on - strandat 2970.734 kb on + strand, within ECD_02838at 2970.835 kb on + strand, within ECD_02838at 2970.926 kb on - strand, within ECD_02838at 2971.055 kb on + strand, within ECD_02838at 2971.055 kb on + strand, within ECD_02838at 2971.063 kb on + strand, within ECD_02838at 2971.211 kb on - strand, within ECD_02838

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
remove
2,967,879 - ECD_02836 0.26 +0.6
2,967,952 + ECD_02836 0.32 +0.4
2,967,953 - ECD_02836 0.32 +0.3
2,968,259 - ECD_02836 0.57 -0.2
2,968,259 - ECD_02836 0.57 -0.4
2,968,484 - ECD_02836 0.75 +0.9
2,968,553 - ECD_02836 0.81 -0.9
2,968,553 - ECD_02836 0.81 -0.2
2,968,553 - ECD_02836 0.81 +0.8
2,968,686 + +0.4
2,968,687 - -1.2
2,968,756 - +0.3
2,968,756 - +0.7
2,968,891 + +0.4
2,968,892 - -2.2
2,968,892 - +0.2
2,968,977 - ECD_02837 0.13 +0.5
2,969,000 + ECD_02837 0.14 -0.6
2,969,001 - ECD_02837 0.14 +0.7
2,969,001 - ECD_02837 0.14 -0.3
2,969,223 - ECD_02837 0.29 +0.2
2,969,313 + ECD_02837 0.35 +0.2
2,969,313 + ECD_02837 0.35 +0.4
2,969,313 + ECD_02837 0.35 -0.0
2,969,313 + ECD_02837 0.35 -0.1
2,969,314 - ECD_02837 0.35 +0.5
2,969,314 - ECD_02837 0.35 +0.9
2,969,411 - ECD_02837 0.42 +1.2
2,969,817 + ECD_02837 0.69 +1.0
2,969,817 + ECD_02837 0.69 +0.6
2,969,817 + ECD_02837 0.69 +0.1
2,969,817 + ECD_02837 0.69 +2.0
2,969,818 - ECD_02837 0.69 +0.5
2,969,818 - ECD_02837 0.69 +0.2
2,969,818 - ECD_02837 0.69 +0.4
2,969,818 - ECD_02837 0.69 -0.1
2,969,818 - ECD_02837 0.69 +0.6
2,970,251 + +0.3
2,970,270 + +0.3
2,970,271 - -0.1
2,970,381 - +1.0
2,970,420 + +1.1
2,970,420 + -0.1
2,970,421 - -0.2
2,970,421 - +0.3
2,970,421 - +0.2
2,970,421 - -1.1
2,970,421 - +0.4
2,970,424 + +1.5
2,970,427 - -0.6
2,970,734 + ECD_02838 0.22 +0.0
2,970,835 + ECD_02838 0.27 -0.1
2,970,926 - ECD_02838 0.31 +0.9
2,971,055 + ECD_02838 0.38 +0.5
2,971,055 + ECD_02838 0.38 -0.3
2,971,063 + ECD_02838 0.38 -0.2
2,971,211 - ECD_02838 0.45 +0.1

Or see this region's nucleotide sequence