Strain Fitness in Escherichia coli BL21 around ECD_02514

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02512 and ECD_02513 are separated by 398 nucleotidesECD_02513 and ECD_02514 overlap by 82 nucleotidesECD_02514 and ECD_02515 are separated by 305 nucleotides ECD_02512: ECD_02512 - hypothetical protein, at 2,626,475 to 2,627,371 _02512 ECD_02513: ECD_02513 - IS1 protein InsA, at 2,627,770 to 2,628,045 _02513 ECD_02514: ECD_02514 - IS1 protein InsB, at 2,627,964 to 2,628,467 _02514 ECD_02515: ECD_02515 - carbon starvation protein, at 2,628,773 to 2,629,750 _02515 Position (kb) 2627 2628 2629Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2627.381 kb on + strandat 2627.408 kb on + strandat 2627.544 kb on + strandat 2627.745 kb on - strandat 2628.610 kb on + strandat 2628.619 kb on - strandat 2628.668 kb on - strandat 2628.720 kb on + strandat 2628.747 kb on + strandat 2628.747 kb on + strandat 2628.747 kb on + strandat 2628.747 kb on + strandat 2628.747 kb on + strandat 2628.747 kb on + strandat 2628.747 kb on + strandat 2628.747 kb on + strandat 2628.747 kb on + strandat 2628.747 kb on + strandat 2628.747 kb on + strandat 2628.747 kb on + strandat 2628.747 kb on + strandat 2628.747 kb on + strandat 2628.747 kb on + strandat 2628.747 kb on + strandat 2628.748 kb on - strandat 2628.748 kb on - strandat 2628.748 kb on - strandat 2628.748 kb on - strandat 2628.748 kb on - strandat 2628.748 kb on - strandat 2628.748 kb on - strandat 2628.756 kb on + strandat 2628.756 kb on + strandat 2628.756 kb on + strandat 2628.756 kb on + strandat 2628.757 kb on - strandat 2628.757 kb on - strandat 2628.757 kb on - strandat 2628.793 kb on - strandat 2628.799 kb on + strandat 2628.825 kb on - strandat 2628.825 kb on - strandat 2629.217 kb on + strand, within ECD_02515at 2629.217 kb on + strand, within ECD_02515at 2629.218 kb on - strand, within ECD_02515at 2629.248 kb on + strand, within ECD_02515at 2629.248 kb on + strand, within ECD_02515at 2629.265 kb on + strand, within ECD_02515at 2629.265 kb on + strand, within ECD_02515at 2629.265 kb on + strand, within ECD_02515at 2629.265 kb on + strand, within ECD_02515at 2629.265 kb on + strand, within ECD_02515at 2629.265 kb on + strand, within ECD_02515at 2629.266 kb on - strand, within ECD_02515at 2629.266 kb on - strand, within ECD_02515at 2629.266 kb on - strand, within ECD_02515at 2629.266 kb on - strand, within ECD_02515at 2629.286 kb on + strand, within ECD_02515at 2629.286 kb on + strand, within ECD_02515at 2629.286 kb on + strand, within ECD_02515at 2629.287 kb on - strand, within ECD_02515at 2629.376 kb on + strand, within ECD_02515at 2629.376 kb on + strand, within ECD_02515at 2629.376 kb on + strand, within ECD_02515at 2629.376 kb on + strand, within ECD_02515at 2629.376 kb on + strand, within ECD_02515

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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2,627,381 + -0.0
2,627,408 + -0.1
2,627,544 + -0.2
2,627,745 - +0.2
2,628,610 + -0.1
2,628,619 - +0.0
2,628,668 - +0.1
2,628,720 + +0.3
2,628,747 + +0.7
2,628,747 + +1.7
2,628,747 + +1.4
2,628,747 + +0.6
2,628,747 + +2.1
2,628,747 + +0.0
2,628,747 + -0.4
2,628,747 + -0.9
2,628,747 + +0.3
2,628,747 + +0.3
2,628,747 + +0.8
2,628,747 + -2.3
2,628,747 + +1.7
2,628,747 + -0.2
2,628,747 + +0.8
2,628,747 + +0.2
2,628,748 - +1.2
2,628,748 - +0.6
2,628,748 - -1.1
2,628,748 - -1.6
2,628,748 - +0.0
2,628,748 - +0.1
2,628,748 - -0.3
2,628,756 + +0.9
2,628,756 + +0.5
2,628,756 + +0.4
2,628,756 + +1.3
2,628,757 - +0.2
2,628,757 - +0.1
2,628,757 - -0.6
2,628,793 - -0.7
2,628,799 + +0.8
2,628,825 - -3.4
2,628,825 - +0.1
2,629,217 + ECD_02515 0.45 -0.7
2,629,217 + ECD_02515 0.45 -0.7
2,629,218 - ECD_02515 0.46 +2.4
2,629,248 + ECD_02515 0.49 +0.7
2,629,248 + ECD_02515 0.49 +0.2
2,629,265 + ECD_02515 0.50 +0.1
2,629,265 + ECD_02515 0.50 -0.6
2,629,265 + ECD_02515 0.50 -1.8
2,629,265 + ECD_02515 0.50 +0.2
2,629,265 + ECD_02515 0.50 -0.6
2,629,265 + ECD_02515 0.50 -0.0
2,629,266 - ECD_02515 0.50 -0.8
2,629,266 - ECD_02515 0.50 +0.7
2,629,266 - ECD_02515 0.50 -0.6
2,629,266 - ECD_02515 0.50 +0.2
2,629,286 + ECD_02515 0.52 +1.1
2,629,286 + ECD_02515 0.52 -1.0
2,629,286 + ECD_02515 0.52 -0.7
2,629,287 - ECD_02515 0.53 +1.1
2,629,376 + ECD_02515 0.62 -0.3
2,629,376 + ECD_02515 0.62 -1.1
2,629,376 + ECD_02515 0.62 -0.9
2,629,376 + ECD_02515 0.62 +0.5
2,629,376 + ECD_02515 0.62 +0.1

Or see this region's nucleotide sequence